Hb_172179_010

Information

Type -
Description -
Location Contig172179: 135-863
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11670g
description POPTRDRAFT_806008; hypothetical protein
nr
ID XP_012065122.1
description PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
swissprot
ID Q84LH3
description Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1
trembl
ID A0A067L6N6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05559 PE=4 SV=1
Gene Ontology
ID GO:0003676
description werner syndrome-like exonuclease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172179_010 0.0 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
2 Hb_007140_010 0.0006044562 - - -
3 Hb_005779_070 0.2072739625 - - -
4 Hb_005952_020 0.2116096566 - - -
5 Hb_114146_010 0.2246904843 - - hypothetical protein JCGZ_15608 [Jatropha curcas]
6 Hb_010589_100 0.2335753593 - - Thioredoxin domain-containing protein 9-like protein [Morus notabilis]
7 Hb_005305_190 0.2431637267 transcription factor TF Family: NAC -
8 Hb_006535_010 0.2580558326 - - -
9 Hb_008221_120 0.2676259724 - - PREDICTED: GDSL esterase/lipase At5g63170-like [Jatropha curcas]
10 Hb_000445_240 0.3138657692 - - conserved hypothetical protein [Ricinus communis]
11 Hb_025669_030 0.3154984976 - - PREDICTED: uncharacterized protein LOC105649301 [Jatropha curcas]
12 Hb_001623_310 0.3468553648 - - hypothetical protein CISIN_1g042596mg [Citrus sinensis]
13 Hb_000696_020 0.3492071355 - - hypothetical protein JCGZ_25344 [Jatropha curcas]
14 Hb_001410_050 0.3559184669 - - putative polyprotein [Oryza sativa Japonica Group]
15 Hb_006355_120 0.3560835375 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002259_180 0.3571983331 - - -
17 Hb_167364_020 0.3625136626 - - -
18 Hb_002435_020 0.3671571404 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
19 Hb_003197_070 0.3693061287 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
20 Hb_005946_180 0.3723897228 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]

Gene co-expression network

sample Hb_172179_010 Hb_172179_010 Hb_007140_010 Hb_007140_010 Hb_172179_010--Hb_007140_010 Hb_005779_070 Hb_005779_070 Hb_172179_010--Hb_005779_070 Hb_005952_020 Hb_005952_020 Hb_172179_010--Hb_005952_020 Hb_114146_010 Hb_114146_010 Hb_172179_010--Hb_114146_010 Hb_010589_100 Hb_010589_100 Hb_172179_010--Hb_010589_100 Hb_005305_190 Hb_005305_190 Hb_172179_010--Hb_005305_190 Hb_007140_010--Hb_005779_070 Hb_007140_010--Hb_005952_020 Hb_007140_010--Hb_114146_010 Hb_007140_010--Hb_010589_100 Hb_007140_010--Hb_005305_190 Hb_005779_070--Hb_005952_020 Hb_005779_070--Hb_010589_100 Hb_008221_120 Hb_008221_120 Hb_005779_070--Hb_008221_120 Hb_005779_070--Hb_005305_190 Hb_005952_020--Hb_010589_100 Hb_005952_020--Hb_008221_120 Hb_005952_020--Hb_005305_190 Hb_000445_240 Hb_000445_240 Hb_114146_010--Hb_000445_240 Hb_114146_010--Hb_005305_190 Hb_000752_030 Hb_000752_030 Hb_114146_010--Hb_000752_030 Hb_010534_030 Hb_010534_030 Hb_114146_010--Hb_010534_030 Hb_010589_100--Hb_008221_120 Hb_010589_100--Hb_005305_190 Hb_005305_190--Hb_008221_120 Hb_005305_190--Hb_000445_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.033164 0 0.0500941 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0601392 0 0 0

CAGE analysis