Hb_005389_130

Information

Type -
Description -
Location Contig5389: 151443-154762
Sequence    

Annotation

kegg
ID cic:CICLE_v10009852mg
description hypothetical protein
nr
ID XP_006451229.1
description hypothetical protein CICLE_v10009852mg [Citrus clementina]
swissprot
ID Q54ZG7
description Transmembrane protein 234 homolog OS=Dictyostelium discoideum GN=DDB_G0277575 PE=3 SV=1
trembl
ID V4WDB9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009852mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description transmembrane protein 234 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47719: 151232-154745 , PASA_asmbl_47722: 151971-152300
cDNA
(Sanger)
(ID:Location)		 043_O22.ab1: 151882-154680

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_130 0.0 - - hypothetical protein CICLE_v10009852mg [Citrus clementina]
2 Hb_001994_010 0.1165133521 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_074683_010 0.1791818522 - - -
4 Hb_002027_370 0.195638537 - - conserved hypothetical protein [Ricinus communis]
5 Hb_017214_050 0.1965721982 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_015836_010 0.1975429655 - - -
7 Hb_012654_030 0.2474374055 - - conserved hypothetical protein [Ricinus communis]
8 Hb_033594_010 0.2866248455 - - -
9 Hb_003788_060 0.3407362956 - - PREDICTED: protein MKS1-like [Populus euphratica]
10 Hb_001066_010 0.3415916278 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_091367_010 0.3782950941 - - hypothetical protein JCGZ_18029 [Jatropha curcas]
12 Hb_010232_010 0.3811609676 - - -
13 Hb_010803_010 0.3824174684 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_000758_040 0.3973478089 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
15 Hb_013394_020 0.4099623222 - - PREDICTED: putative laccase-9 [Vitis vinifera]
16 Hb_047735_010 0.4118493363 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
17 Hb_155103_010 0.414412009 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_003589_010 0.4147612367 - - -
19 Hb_008948_030 0.4149986864 - - hypothetical protein RCOM_0224470 [Ricinus communis]
20 Hb_003878_160 0.415464456 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005389_130 Hb_005389_130 Hb_001994_010 Hb_001994_010 Hb_005389_130--Hb_001994_010 Hb_074683_010 Hb_074683_010 Hb_005389_130--Hb_074683_010 Hb_002027_370 Hb_002027_370 Hb_005389_130--Hb_002027_370 Hb_017214_050 Hb_017214_050 Hb_005389_130--Hb_017214_050 Hb_015836_010 Hb_015836_010 Hb_005389_130--Hb_015836_010 Hb_012654_030 Hb_012654_030 Hb_005389_130--Hb_012654_030 Hb_001994_010--Hb_074683_010 Hb_001994_010--Hb_002027_370 Hb_001994_010--Hb_017214_050 Hb_001994_010--Hb_015836_010 Hb_033594_010 Hb_033594_010 Hb_001994_010--Hb_033594_010 Hb_074683_010--Hb_002027_370 Hb_074683_010--Hb_017214_050 Hb_074683_010--Hb_015836_010 Hb_074683_010--Hb_033594_010 Hb_002027_370--Hb_017214_050 Hb_002027_370--Hb_015836_010 Hb_001066_010 Hb_001066_010 Hb_002027_370--Hb_001066_010 Hb_017214_050--Hb_015836_010 Hb_017214_050--Hb_001066_010 Hb_106496_010 Hb_106496_010 Hb_015836_010--Hb_106496_010 Hb_003788_060 Hb_003788_060 Hb_012654_030--Hb_003788_060 Hb_012654_030--Hb_001994_010 Hb_013394_020 Hb_013394_020 Hb_012654_030--Hb_013394_020 Hb_007809_070 Hb_007809_070 Hb_012654_030--Hb_007809_070 Hb_022790_030 Hb_022790_030 Hb_012654_030--Hb_022790_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0863559 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0787728 0 0.0968846 0

CAGE analysis