Hb_003752_040

Information

Type -
Description -
Location Contig3752: 41281-46881
Sequence    

Annotation

kegg
ID sly:101253376
description DNA-binding protein HEXBP-like
nr
ID XP_012437464.1
description PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M1DVX7
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400044844 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003752_040 0.0 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
2 Hb_020332_020 0.1859752872 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_000152_400 0.1860635476 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
4 Hb_000202_110 0.1860932659 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
5 Hb_003060_130 0.1861170712 - - PREDICTED: protein P21-like [Jatropha curcas]
6 Hb_032050_030 0.1867405738 - - C, putative [Ricinus communis]
7 Hb_001148_010 0.1875544621 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_003653_040 0.1879941842 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
9 Hb_030370_080 0.1887081872 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
10 Hb_135174_010 0.1887220563 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
11 Hb_004528_030 0.188726253 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_001140_310 0.1887269787 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
13 Hb_002112_030 0.1888630502 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
14 Hb_008021_030 0.1888926585 - - short-chain dehydrogenase, putative [Ricinus communis]
15 Hb_020956_050 0.1894399676 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
16 Hb_153625_010 0.1900606702 - - PREDICTED: 21 kDa protein [Populus euphratica]
17 Hb_100648_020 0.191478088 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_001192_020 0.1918584905 - - -
19 Hb_004093_070 0.1919742074 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
20 Hb_003370_040 0.1922812133 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]

Gene co-expression network

sample Hb_003752_040 Hb_003752_040 Hb_020332_020 Hb_020332_020 Hb_003752_040--Hb_020332_020 Hb_000152_400 Hb_000152_400 Hb_003752_040--Hb_000152_400 Hb_000202_110 Hb_000202_110 Hb_003752_040--Hb_000202_110 Hb_003060_130 Hb_003060_130 Hb_003752_040--Hb_003060_130 Hb_032050_030 Hb_032050_030 Hb_003752_040--Hb_032050_030 Hb_001148_010 Hb_001148_010 Hb_003752_040--Hb_001148_010 Hb_020332_020--Hb_000152_400 Hb_020332_020--Hb_032050_030 Hb_020332_020--Hb_000202_110 Hb_020332_020--Hb_003060_130 Hb_030370_080 Hb_030370_080 Hb_020332_020--Hb_030370_080 Hb_002112_030 Hb_002112_030 Hb_020332_020--Hb_002112_030 Hb_000152_400--Hb_032050_030 Hb_000152_400--Hb_000202_110 Hb_000152_400--Hb_003060_130 Hb_000152_400--Hb_030370_080 Hb_000152_400--Hb_002112_030 Hb_000202_110--Hb_003060_130 Hb_000202_110--Hb_001148_010 Hb_003653_040 Hb_003653_040 Hb_000202_110--Hb_003653_040 Hb_135174_010 Hb_135174_010 Hb_000202_110--Hb_135174_010 Hb_003060_130--Hb_001148_010 Hb_003060_130--Hb_003653_040 Hb_003060_130--Hb_135174_010 Hb_032050_030--Hb_030370_080 Hb_032050_030--Hb_002112_030 Hb_153625_010 Hb_153625_010 Hb_032050_030--Hb_153625_010 Hb_032050_030--Hb_000202_110 Hb_001148_010--Hb_003653_040 Hb_001148_010--Hb_135174_010 Hb_004528_030 Hb_004528_030 Hb_001148_010--Hb_004528_030 Hb_001140_310 Hb_001140_310 Hb_001148_010--Hb_001140_310 Hb_008021_030 Hb_008021_030 Hb_001148_010--Hb_008021_030 Hb_020956_050 Hb_020956_050 Hb_001148_010--Hb_020956_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.180955 0.0600784 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.650346

CAGE analysis