Hb_003170_040

Information

Type -
Description -
Location Contig3170: 79227-82490
Sequence    

Annotation

kegg
ID pmum:103326572
description microfibrillar-associated protein 1-like
nr
ID XP_008227035.1
description PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
swissprot
ID P55080
description Microfibrillar-associated protein 1 OS=Gallus gallus GN=MFAP1 PE=2 SV=1
trembl
ID M5WI16
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005985mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003170_040 0.0 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
2 Hb_145915_010 0.0909907512 - - PREDICTED: uncharacterized protein LOC105630963 [Jatropha curcas]
3 Hb_007545_030 0.1078851731 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003001_150 0.108736143 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_002276_060 0.1116798178 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
6 Hb_001439_140 0.1189604077 - - pattern formation protein, putative [Ricinus communis]
7 Hb_000072_150 0.1197537662 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
8 Hb_000510_200 0.1221064796 - - nucleotide binding protein, putative [Ricinus communis]
9 Hb_007805_010 0.1225996495 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
10 Hb_005901_020 0.1241982379 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
11 Hb_012286_010 0.1252833539 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
12 Hb_000193_310 0.1257646683 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
13 Hb_002974_060 0.1273994887 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
14 Hb_020665_010 0.1289228667 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
15 Hb_003376_400 0.1313105271 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
16 Hb_000739_310 0.1319785884 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
17 Hb_166222_010 0.1327166497 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
18 Hb_001496_070 0.1332903801 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
19 Hb_005181_110 0.1353403113 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
20 Hb_005396_130 0.1376567757 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_003170_040 Hb_003170_040 Hb_145915_010 Hb_145915_010 Hb_003170_040--Hb_145915_010 Hb_007545_030 Hb_007545_030 Hb_003170_040--Hb_007545_030 Hb_003001_150 Hb_003001_150 Hb_003170_040--Hb_003001_150 Hb_002276_060 Hb_002276_060 Hb_003170_040--Hb_002276_060 Hb_001439_140 Hb_001439_140 Hb_003170_040--Hb_001439_140 Hb_000072_150 Hb_000072_150 Hb_003170_040--Hb_000072_150 Hb_020665_010 Hb_020665_010 Hb_145915_010--Hb_020665_010 Hb_012286_010 Hb_012286_010 Hb_145915_010--Hb_012286_010 Hb_009270_010 Hb_009270_010 Hb_145915_010--Hb_009270_010 Hb_145915_010--Hb_002276_060 Hb_000661_030 Hb_000661_030 Hb_145915_010--Hb_000661_030 Hb_000739_310 Hb_000739_310 Hb_007545_030--Hb_000739_310 Hb_024570_010 Hb_024570_010 Hb_007545_030--Hb_024570_010 Hb_000261_350 Hb_000261_350 Hb_007545_030--Hb_000261_350 Hb_001019_190 Hb_001019_190 Hb_007545_030--Hb_001019_190 Hb_028089_010 Hb_028089_010 Hb_007545_030--Hb_028089_010 Hb_000032_100 Hb_000032_100 Hb_007545_030--Hb_000032_100 Hb_003544_100 Hb_003544_100 Hb_003001_150--Hb_003544_100 Hb_003001_150--Hb_002276_060 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_001136_100 Hb_001136_100 Hb_003001_150--Hb_001136_100 Hb_000729_050 Hb_000729_050 Hb_003001_150--Hb_000729_050 Hb_007943_100 Hb_007943_100 Hb_003001_150--Hb_007943_100 Hb_000170_190 Hb_000170_190 Hb_002276_060--Hb_000170_190 Hb_000034_040 Hb_000034_040 Hb_002276_060--Hb_000034_040 Hb_002276_060--Hb_012286_010 Hb_002193_010 Hb_002193_010 Hb_002276_060--Hb_002193_010 Hb_005181_110 Hb_005181_110 Hb_002276_060--Hb_005181_110 Hb_000313_060 Hb_000313_060 Hb_001439_140--Hb_000313_060 Hb_007586_030 Hb_007586_030 Hb_001439_140--Hb_007586_030 Hb_001930_010 Hb_001930_010 Hb_001439_140--Hb_001930_010 Hb_000193_310 Hb_000193_310 Hb_001439_140--Hb_000193_310 Hb_010417_050 Hb_010417_050 Hb_001439_140--Hb_010417_050 Hb_014267_010 Hb_014267_010 Hb_001439_140--Hb_014267_010 Hb_000510_200 Hb_000510_200 Hb_000072_150--Hb_000510_200 Hb_002893_150 Hb_002893_150 Hb_000072_150--Hb_002893_150 Hb_001235_200 Hb_001235_200 Hb_000072_150--Hb_001235_200 Hb_028487_110 Hb_028487_110 Hb_000072_150--Hb_028487_110 Hb_001599_030 Hb_001599_030 Hb_000072_150--Hb_001599_030 Hb_002131_020 Hb_002131_020 Hb_000072_150--Hb_002131_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49286 0.421067 0.169427 0.453036 1.19533 1.61517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.736196 0.526515 1.28292 1.15689 1.42823

CAGE analysis