Hb_002505_050

Information

Type -
Description -
Location Contig2505: 106034-110266
Sequence    

Annotation

kegg
ID tcc:TCM_033423
description hypothetical protein
nr
ID XP_012481130.1
description PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002505_050 0.0 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
2 Hb_000965_020 0.1689524648 - - -
3 Hb_092706_020 0.198544688 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
4 Hb_003747_030 0.2295397669 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
5 Hb_000521_150 0.2312438666 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
6 Hb_143629_220 0.2340455531 - - PREDICTED: hydrophobic protein LTI6B [Phoenix dactylifera]
7 Hb_003581_090 0.2357937998 - - PREDICTED: galactose oxidase [Jatropha curcas]
8 Hb_002928_110 0.2373365156 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
9 Hb_003752_110 0.2420762374 - - -
10 Hb_000878_170 0.2474680552 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like [Jatropha curcas]
11 Hb_000018_190 0.2480812597 - - tocopherol cyclase [Hevea brasiliensis]
12 Hb_007451_030 0.2543204847 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
13 Hb_001776_090 0.2545884648 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
14 Hb_000412_110 0.2558793197 - - Rop4 [Hevea brasiliensis]
15 Hb_029223_030 0.2574740318 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
16 Hb_001545_040 0.2577514244 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
17 Hb_001478_050 0.2578154013 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
18 Hb_000816_110 0.2586072383 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
19 Hb_000340_430 0.258902197 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_002291_030 0.2590121152 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]

Gene co-expression network

sample Hb_002505_050 Hb_002505_050 Hb_000965_020 Hb_000965_020 Hb_002505_050--Hb_000965_020 Hb_092706_020 Hb_092706_020 Hb_002505_050--Hb_092706_020 Hb_003747_030 Hb_003747_030 Hb_002505_050--Hb_003747_030 Hb_000521_150 Hb_000521_150 Hb_002505_050--Hb_000521_150 Hb_143629_220 Hb_143629_220 Hb_002505_050--Hb_143629_220 Hb_003581_090 Hb_003581_090 Hb_002505_050--Hb_003581_090 Hb_000878_170 Hb_000878_170 Hb_000965_020--Hb_000878_170 Hb_001776_090 Hb_001776_090 Hb_000965_020--Hb_001776_090 Hb_001405_050 Hb_001405_050 Hb_000965_020--Hb_001405_050 Hb_000412_110 Hb_000412_110 Hb_000965_020--Hb_000412_110 Hb_000965_020--Hb_092706_020 Hb_092706_020--Hb_003581_090 Hb_002291_030 Hb_002291_030 Hb_092706_020--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_092706_020--Hb_002928_110 Hb_092706_020--Hb_000521_150 Hb_000085_200 Hb_000085_200 Hb_092706_020--Hb_000085_200 Hb_000926_290 Hb_000926_290 Hb_092706_020--Hb_000926_290 Hb_183612_100 Hb_183612_100 Hb_003747_030--Hb_183612_100 Hb_001157_030 Hb_001157_030 Hb_003747_030--Hb_001157_030 Hb_002890_280 Hb_002890_280 Hb_003747_030--Hb_002890_280 Hb_000018_190 Hb_000018_190 Hb_003747_030--Hb_000018_190 Hb_000056_100 Hb_000056_100 Hb_003747_030--Hb_000056_100 Hb_003025_090 Hb_003025_090 Hb_003747_030--Hb_003025_090 Hb_003226_150 Hb_003226_150 Hb_000521_150--Hb_003226_150 Hb_002529_100 Hb_002529_100 Hb_000521_150--Hb_002529_100 Hb_000521_150--Hb_000926_290 Hb_000521_150--Hb_003581_090 Hb_000045_190 Hb_000045_190 Hb_000521_150--Hb_000045_190 Hb_005496_030 Hb_005496_030 Hb_143629_220--Hb_005496_030 Hb_001053_160 Hb_001053_160 Hb_143629_220--Hb_001053_160 Hb_002316_060 Hb_002316_060 Hb_143629_220--Hb_002316_060 Hb_000531_020 Hb_000531_020 Hb_143629_220--Hb_000531_020 Hb_001314_100 Hb_001314_100 Hb_143629_220--Hb_001314_100 Hb_000526_040 Hb_000526_040 Hb_143629_220--Hb_000526_040 Hb_003581_090--Hb_002291_030 Hb_002759_230 Hb_002759_230 Hb_003581_090--Hb_002759_230 Hb_003581_090--Hb_002529_100 Hb_003581_090--Hb_000926_290 Hb_001722_040 Hb_001722_040 Hb_003581_090--Hb_001722_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0944878 0.0142821 0.026391 0 0.0172458 0.0358603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.039278 0.092692 0.0575559 0 0

CAGE analysis