Hb_001890_030

Information

Type -
Description -
Location Contig1890: 17679-19277
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18735: 18954-19432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001890_030 0.0 - - -
2 Hb_154381_010 0.2598676261 - - -
3 Hb_003551_040 0.260261541 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
4 Hb_060585_010 0.2916870545 - - unnamed protein product [Coffea canephora]
5 Hb_002311_460 0.295046901 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_012539_090 0.3125079741 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
7 Hb_004885_020 0.313871046 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
8 Hb_065452_010 0.3269705606 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001832_220 0.3316310362 - - -
10 Hb_094437_010 0.3343728611 - - -
11 Hb_000317_130 0.3367229112 - - vacuolar membrane protein pep3, putative [Ricinus communis]
12 Hb_030885_020 0.3368316768 - - -
13 Hb_000245_160 0.3381811223 - - PREDICTED: mavicyanin [Jatropha curcas]
14 Hb_001478_070 0.34541311 - - PREDICTED: uncharacterized protein LOC105789550 [Gossypium raimondii]
15 Hb_021068_030 0.3482856052 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
16 Hb_002391_090 0.3490621073 - - PREDICTED: IST1-like protein [Jatropha curcas]
17 Hb_172572_010 0.3535426639 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
18 Hb_000139_120 0.3541660441 - - sugar transporter, putative [Ricinus communis]
19 Hb_001386_010 0.3563020444 - - PREDICTED: uncharacterized protein LOC105632444 [Jatropha curcas]
20 Hb_000078_160 0.3591475041 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_001890_030 Hb_001890_030 Hb_154381_010 Hb_154381_010 Hb_001890_030--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_001890_030--Hb_003551_040 Hb_060585_010 Hb_060585_010 Hb_001890_030--Hb_060585_010 Hb_002311_460 Hb_002311_460 Hb_001890_030--Hb_002311_460 Hb_012539_090 Hb_012539_090 Hb_001890_030--Hb_012539_090 Hb_004885_020 Hb_004885_020 Hb_001890_030--Hb_004885_020 Hb_154381_010--Hb_003551_040 Hb_154381_010--Hb_002311_460 Hb_001832_220 Hb_001832_220 Hb_154381_010--Hb_001832_220 Hb_030885_020 Hb_030885_020 Hb_154381_010--Hb_030885_020 Hb_154381_010--Hb_012539_090 Hb_000737_020 Hb_000737_020 Hb_154381_010--Hb_000737_020 Hb_003551_040--Hb_002311_460 Hb_003551_040--Hb_001832_220 Hb_003551_040--Hb_030885_020 Hb_003551_040--Hb_012539_090 Hb_003551_040--Hb_000737_020 Hb_060585_010--Hb_030885_020 Hb_122741_010 Hb_122741_010 Hb_060585_010--Hb_122741_010 Hb_001916_010 Hb_001916_010 Hb_060585_010--Hb_001916_010 Hb_060585_010--Hb_003551_040 Hb_060585_010--Hb_154381_010 Hb_060585_010--Hb_012539_090 Hb_002311_460--Hb_000737_020 Hb_002311_460--Hb_001832_220 Hb_000078_160 Hb_000078_160 Hb_002311_460--Hb_000078_160 Hb_002311_460--Hb_004885_020 Hb_012539_090--Hb_001832_220 Hb_002108_020 Hb_002108_020 Hb_012539_090--Hb_002108_020 Hb_004907_040 Hb_004907_040 Hb_012539_090--Hb_004907_040 Hb_000134_100 Hb_000134_100 Hb_012539_090--Hb_000134_100 Hb_000191_160 Hb_000191_160 Hb_004885_020--Hb_000191_160 Hb_004885_020--Hb_000078_160 Hb_004885_020--Hb_154381_010 Hb_004885_020--Hb_003551_040 Hb_003025_010 Hb_003025_010 Hb_004885_020--Hb_003025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.284669 0.259018 0.111208 0.327213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.197692 0

CAGE analysis