Hb_001481_180

Information

Type -
Description -
Location Contig1481: 216977-222588
Sequence    

Annotation

kegg
ID tcc:TCM_015905
description H(+)-ATPase 11 isoform 1
nr
ID AKG55564.1
description plasma membrane H+-ATPase [Hevea brasiliensis]
swissprot
ID Q9LY32
description ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=AHA7 PE=2 SV=1
trembl
ID A0A067KUU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03448 PE=3 SV=1
Gene Ontology
ID GO:0016021
description h+-atpase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_180 0.0 - - plasma membrane H+-ATPase [Hevea brasiliensis]
2 Hb_000449_040 0.1660914797 - - protein with unknown function [Ricinus communis]
3 Hb_001437_220 0.1704587595 - - Transmembrane protein, putative [Ricinus communis]
4 Hb_017895_030 0.1730811207 transcription factor TF Family: C2H2 -
5 Hb_116349_170 0.1746582207 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
6 Hb_000261_510 0.1815866967 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Populus euphratica]
7 Hb_001950_120 0.1862688776 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
8 Hb_100777_010 0.1864235687 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
9 Hb_148209_120 0.1877136442 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
10 Hb_003057_130 0.1911746922 - - -
11 Hb_143629_230 0.1913191278 - - ring finger, putative [Ricinus communis]
12 Hb_000479_180 0.1914478938 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002781_020 0.1926710194 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
14 Hb_003680_070 0.1929167224 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
15 Hb_184403_020 0.1938969574 - - PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]
16 Hb_001235_070 0.1958202546 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004595_020 0.1971282754 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
18 Hb_025246_010 0.1984967844 - - -
19 Hb_071130_030 0.1986363456 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
20 Hb_008318_010 0.198736617 - - PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001481_180 Hb_001481_180 Hb_000449_040 Hb_000449_040 Hb_001481_180--Hb_000449_040 Hb_001437_220 Hb_001437_220 Hb_001481_180--Hb_001437_220 Hb_017895_030 Hb_017895_030 Hb_001481_180--Hb_017895_030 Hb_116349_170 Hb_116349_170 Hb_001481_180--Hb_116349_170 Hb_000261_510 Hb_000261_510 Hb_001481_180--Hb_000261_510 Hb_001950_120 Hb_001950_120 Hb_001481_180--Hb_001950_120 Hb_000449_040--Hb_116349_170 Hb_002781_020 Hb_002781_020 Hb_000449_040--Hb_002781_020 Hb_000487_320 Hb_000487_320 Hb_000449_040--Hb_000487_320 Hb_000645_190 Hb_000645_190 Hb_000449_040--Hb_000645_190 Hb_143629_230 Hb_143629_230 Hb_000449_040--Hb_143629_230 Hb_000134_020 Hb_000134_020 Hb_000449_040--Hb_000134_020 Hb_002214_050 Hb_002214_050 Hb_001437_220--Hb_002214_050 Hb_000120_750 Hb_000120_750 Hb_001437_220--Hb_000120_750 Hb_000045_190 Hb_000045_190 Hb_001437_220--Hb_000045_190 Hb_003050_230 Hb_003050_230 Hb_001437_220--Hb_003050_230 Hb_010172_030 Hb_010172_030 Hb_001437_220--Hb_010172_030 Hb_000333_090 Hb_000333_090 Hb_001437_220--Hb_000333_090 Hb_003680_070 Hb_003680_070 Hb_017895_030--Hb_003680_070 Hb_001754_010 Hb_001754_010 Hb_017895_030--Hb_001754_010 Hb_001008_010 Hb_001008_010 Hb_017895_030--Hb_001008_010 Hb_010344_040 Hb_010344_040 Hb_017895_030--Hb_010344_040 Hb_017895_030--Hb_000333_090 Hb_000310_030 Hb_000310_030 Hb_017895_030--Hb_000310_030 Hb_000261_460 Hb_000261_460 Hb_116349_170--Hb_000261_460 Hb_011139_020 Hb_011139_020 Hb_116349_170--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_116349_170--Hb_000362_210 Hb_100777_010 Hb_100777_010 Hb_116349_170--Hb_100777_010 Hb_007021_020 Hb_007021_020 Hb_116349_170--Hb_007021_020 Hb_000699_110 Hb_000699_110 Hb_000261_510--Hb_000699_110 Hb_004724_140 Hb_004724_140 Hb_000261_510--Hb_004724_140 Hb_003226_150 Hb_003226_150 Hb_000261_510--Hb_003226_150 Hb_025246_010 Hb_025246_010 Hb_000261_510--Hb_025246_010 Hb_002681_020 Hb_002681_020 Hb_000261_510--Hb_002681_020 Hb_000984_190 Hb_000984_190 Hb_000261_510--Hb_000984_190 Hb_001769_100 Hb_001769_100 Hb_001950_120--Hb_001769_100 Hb_012265_010 Hb_012265_010 Hb_001950_120--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001950_120--Hb_003623_050 Hb_001950_120--Hb_000449_040 Hb_001950_120--Hb_000645_190 Hb_008318_010 Hb_008318_010 Hb_001950_120--Hb_008318_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110251 0 0.00723081 0.0141409 0.0370563 0.147969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.273232 0.181917 0.0628269 0.0526049 0.0700288

CAGE analysis