Hb_001054_110

Information

Type -
Description -
Location Contig1054: 156431-157753
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03960g
description POPTRDRAFT_772246; hypothetical protein
nr
ID XP_012072920.1
description PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
swissprot
ID Q5PNY6
description U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1
trembl
ID A0A067KYT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07952 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 21-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01836: 157076-157296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_110 0.0 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
2 Hb_137349_010 0.1452997445 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
3 Hb_000925_020 0.1598449624 - - PREDICTED: protein YLS9 [Jatropha curcas]
4 Hb_000628_050 0.1603131654 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_005773_010 0.1620259599 - - -
6 Hb_004924_020 0.1662564358 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_064885_010 0.1700017232 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
8 Hb_160950_010 0.1713115684 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
9 Hb_000072_010 0.1719840254 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
10 Hb_000139_050 0.1722280237 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
11 Hb_158110_010 0.1731002133 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
12 Hb_108670_010 0.1731789317 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
13 Hb_004241_190 0.1757578718 - - -
14 Hb_009083_020 0.1762514361 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
15 Hb_008963_010 0.1785569363 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
16 Hb_173029_010 0.1794393653 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_104855_010 0.1796264133 - - -
18 Hb_000061_060 0.1800162984 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
19 Hb_113676_010 0.1823882549 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
20 Hb_004096_140 0.1829602642 - - Lipase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001054_110 Hb_001054_110 Hb_137349_010 Hb_137349_010 Hb_001054_110--Hb_137349_010 Hb_000925_020 Hb_000925_020 Hb_001054_110--Hb_000925_020 Hb_000628_050 Hb_000628_050 Hb_001054_110--Hb_000628_050 Hb_005773_010 Hb_005773_010 Hb_001054_110--Hb_005773_010 Hb_004924_020 Hb_004924_020 Hb_001054_110--Hb_004924_020 Hb_064885_010 Hb_064885_010 Hb_001054_110--Hb_064885_010 Hb_137349_010--Hb_000628_050 Hb_004241_190 Hb_004241_190 Hb_137349_010--Hb_004241_190 Hb_137349_010--Hb_005773_010 Hb_173029_010 Hb_173029_010 Hb_137349_010--Hb_173029_010 Hb_000061_060 Hb_000061_060 Hb_137349_010--Hb_000061_060 Hb_000668_220 Hb_000668_220 Hb_137349_010--Hb_000668_220 Hb_158110_010 Hb_158110_010 Hb_000925_020--Hb_158110_010 Hb_104855_010 Hb_104855_010 Hb_000925_020--Hb_104855_010 Hb_182625_010 Hb_182625_010 Hb_000925_020--Hb_182625_010 Hb_014361_140 Hb_014361_140 Hb_000925_020--Hb_014361_140 Hb_011671_360 Hb_011671_360 Hb_000925_020--Hb_011671_360 Hb_000925_020--Hb_000061_060 Hb_000628_050--Hb_004241_190 Hb_000628_050--Hb_173029_010 Hb_000628_050--Hb_005773_010 Hb_000628_050--Hb_000061_060 Hb_000628_050--Hb_000668_220 Hb_053935_010 Hb_053935_010 Hb_000628_050--Hb_053935_010 Hb_000072_010 Hb_000072_010 Hb_005773_010--Hb_000072_010 Hb_005773_010--Hb_104855_010 Hb_160950_010 Hb_160950_010 Hb_005773_010--Hb_160950_010 Hb_039440_010 Hb_039440_010 Hb_005773_010--Hb_039440_010 Hb_005773_010--Hb_000061_060 Hb_008963_010 Hb_008963_010 Hb_004924_020--Hb_008963_010 Hb_116103_010 Hb_116103_010 Hb_004924_020--Hb_116103_010 Hb_000904_110 Hb_000904_110 Hb_004924_020--Hb_000904_110 Hb_004924_020--Hb_173029_010 Hb_004924_020--Hb_000668_220 Hb_091826_020 Hb_091826_020 Hb_004924_020--Hb_091826_020 Hb_064885_010--Hb_116103_010 Hb_001002_020 Hb_001002_020 Hb_064885_010--Hb_001002_020 Hb_005928_010 Hb_005928_010 Hb_064885_010--Hb_005928_010 Hb_064885_010--Hb_000904_110 Hb_054165_010 Hb_054165_010 Hb_064885_010--Hb_054165_010 Hb_000277_030 Hb_000277_030 Hb_064885_010--Hb_000277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.407776 0.434941 0.626251 0 0.0162565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0361384 0 0 0.022738 0

CAGE analysis