Hb_000742_080

Information

Type -
Description -
Location Contig742: 70162-72092
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56479: 72113-79516
cDNA
(Sanger)
(ID:Location)		 050_B18.ab1: 72113-79516

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_080 0.0 - - -
2 Hb_170305_020 0.1776629927 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
3 Hb_012395_100 0.1791884249 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
4 Hb_017895_050 0.1807833775 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
5 Hb_002518_250 0.1808174101 - - conserved hypothetical protein 10 [Hevea brasiliensis]
6 Hb_004852_020 0.1842216309 - - -
7 Hb_000997_260 0.1844415036 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
8 Hb_004375_060 0.186163062 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
9 Hb_000175_520 0.1877157353 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_001248_020 0.1895329599 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
11 Hb_000933_140 0.1911025877 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
12 Hb_000500_280 0.1931038466 - - Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
13 Hb_180992_010 0.194229687 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
14 Hb_000193_230 0.1951082457 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
15 Hb_012305_060 0.1969262532 - - protein translocase, putative [Ricinus communis]
16 Hb_004545_160 0.1977114808 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
17 Hb_002298_040 0.1981506989 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
18 Hb_029879_080 0.198560354 - - unknown [Populus trichocarpa]
19 Hb_030565_070 0.2004733387 - - -
20 Hb_010578_090 0.2006133434 - - HEV2.1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000742_080 Hb_000742_080 Hb_170305_020 Hb_170305_020 Hb_000742_080--Hb_170305_020 Hb_012395_100 Hb_012395_100 Hb_000742_080--Hb_012395_100 Hb_017895_050 Hb_017895_050 Hb_000742_080--Hb_017895_050 Hb_002518_250 Hb_002518_250 Hb_000742_080--Hb_002518_250 Hb_004852_020 Hb_004852_020 Hb_000742_080--Hb_004852_020 Hb_000997_260 Hb_000997_260 Hb_000742_080--Hb_000997_260 Hb_036369_010 Hb_036369_010 Hb_170305_020--Hb_036369_010 Hb_000366_100 Hb_000366_100 Hb_170305_020--Hb_000366_100 Hb_000617_320 Hb_000617_320 Hb_170305_020--Hb_000617_320 Hb_007632_250 Hb_007632_250 Hb_170305_020--Hb_007632_250 Hb_001248_020 Hb_001248_020 Hb_170305_020--Hb_001248_020 Hb_170305_020--Hb_012395_100 Hb_000175_520 Hb_000175_520 Hb_012395_100--Hb_000175_520 Hb_012395_100--Hb_001248_020 Hb_023675_010 Hb_023675_010 Hb_012395_100--Hb_023675_010 Hb_012395_100--Hb_036369_010 Hb_004545_160 Hb_004545_160 Hb_012395_100--Hb_004545_160 Hb_012395_100--Hb_004852_020 Hb_027892_060 Hb_027892_060 Hb_017895_050--Hb_027892_060 Hb_003453_010 Hb_003453_010 Hb_017895_050--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_017895_050--Hb_001437_040 Hb_004204_030 Hb_004204_030 Hb_017895_050--Hb_004204_030 Hb_098709_010 Hb_098709_010 Hb_017895_050--Hb_098709_010 Hb_003911_040 Hb_003911_040 Hb_017895_050--Hb_003911_040 Hb_002518_250--Hb_000175_520 Hb_002518_250--Hb_003453_010 Hb_002518_250--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_002518_250--Hb_000933_140 Hb_002518_250--Hb_017895_050 Hb_002518_250--Hb_004852_020 Hb_004852_020--Hb_000175_520 Hb_007317_220 Hb_007317_220 Hb_004852_020--Hb_007317_220 Hb_002942_030 Hb_002942_030 Hb_004852_020--Hb_002942_030 Hb_004852_020--Hb_023675_010 Hb_004852_020--Hb_001248_020 Hb_019516_040 Hb_019516_040 Hb_000997_260--Hb_019516_040 Hb_003636_090 Hb_003636_090 Hb_000997_260--Hb_003636_090 Hb_000997_260--Hb_002518_250 Hb_001140_160 Hb_001140_160 Hb_000997_260--Hb_001140_160 Hb_000997_260--Hb_000933_140 Hb_000085_340 Hb_000085_340 Hb_000997_260--Hb_000085_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.478187 0 0.149873 0 0.31871 0.518683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.593301 0.349541 0.194841 0.0974656 0

CAGE analysis