Hb_000732_090

Information

Type -
Description -
Location Contig732: 98589-100022
Sequence    

Annotation

kegg
ID rcu:RCOM_1096490
description cyclin d, putative
nr
ID XP_002524706.1
description cyclin d, putative [Ricinus communis]
swissprot
ID Q9ZR04
description Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=3 SV=1
trembl
ID B9SFD7
description Cyclin d, putative OS=Ricinus communis GN=RCOM_1096490 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-d6-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56114: 98416-98915 , PASA_asmbl_56115: 98944-99258 , PASA_asmbl_56116: 99423-99678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_090 0.0 - - cyclin d, putative [Ricinus communis]
2 Hb_002205_220 0.088526829 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
3 Hb_000675_130 0.0888980303 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
4 Hb_008226_050 0.0927850701 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
5 Hb_000187_020 0.0998651398 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
6 Hb_000394_120 0.101358444 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
7 Hb_000130_400 0.1014287487 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
8 Hb_001257_070 0.1015082548 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
9 Hb_030545_020 0.1076715996 - - conserved hypothetical protein [Ricinus communis]
10 Hb_034420_010 0.1078935974 - - glutathione S-transferase [Caragana korshinskii]
11 Hb_000375_200 0.1147693683 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
12 Hb_000193_170 0.1158340124 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
13 Hb_001123_180 0.1160524178 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000445_320 0.1186054679 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
15 Hb_004241_160 0.1186354608 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
16 Hb_001541_140 0.1192171548 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
17 Hb_002110_070 0.1219895379 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
18 Hb_003641_040 0.1225492257 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
19 Hb_059832_010 0.1243578934 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
20 Hb_000364_140 0.1249329323 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]

Gene co-expression network

sample Hb_000732_090 Hb_000732_090 Hb_002205_220 Hb_002205_220 Hb_000732_090--Hb_002205_220 Hb_000675_130 Hb_000675_130 Hb_000732_090--Hb_000675_130 Hb_008226_050 Hb_008226_050 Hb_000732_090--Hb_008226_050 Hb_000187_020 Hb_000187_020 Hb_000732_090--Hb_000187_020 Hb_000394_120 Hb_000394_120 Hb_000732_090--Hb_000394_120 Hb_000130_400 Hb_000130_400 Hb_000732_090--Hb_000130_400 Hb_000375_200 Hb_000375_200 Hb_002205_220--Hb_000375_200 Hb_028995_020 Hb_028995_020 Hb_002205_220--Hb_028995_020 Hb_002205_220--Hb_000675_130 Hb_002205_220--Hb_008226_050 Hb_002110_070 Hb_002110_070 Hb_002205_220--Hb_002110_070 Hb_000175_110 Hb_000175_110 Hb_002205_220--Hb_000175_110 Hb_000675_130--Hb_000394_120 Hb_003641_040 Hb_003641_040 Hb_000675_130--Hb_003641_040 Hb_000675_130--Hb_008226_050 Hb_001123_180 Hb_001123_180 Hb_000675_130--Hb_001123_180 Hb_000193_170 Hb_000193_170 Hb_000675_130--Hb_000193_170 Hb_008226_050--Hb_003641_040 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_008226_050--Hb_000130_400 Hb_000445_320 Hb_000445_320 Hb_000187_020--Hb_000445_320 Hb_000187_020--Hb_000375_200 Hb_059832_010 Hb_059832_010 Hb_000187_020--Hb_059832_010 Hb_000187_020--Hb_000193_170 Hb_000187_020--Hb_000130_400 Hb_000051_130 Hb_000051_130 Hb_000187_020--Hb_000051_130 Hb_000394_120--Hb_001123_180 Hb_000394_120--Hb_003641_040 Hb_056196_020 Hb_056196_020 Hb_000394_120--Hb_056196_020 Hb_034420_010 Hb_034420_010 Hb_000394_120--Hb_034420_010 Hb_000394_120--Hb_008226_050 Hb_000130_400--Hb_000375_200 Hb_000130_400--Hb_059832_010 Hb_000496_100 Hb_000496_100 Hb_000130_400--Hb_000496_100 Hb_000130_400--Hb_000193_170 Hb_028486_020 Hb_028486_020 Hb_000130_400--Hb_028486_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.0023 1.42055 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0578855 0 0 0.0367146 0.277107

CAGE analysis