Hb_000627_150

Information

Type -
Description -
Location Contig627: 144827-148001
Sequence    

Annotation

kegg
ID rcu:RCOM_1677790
description ribulose-5-phosphate-3-epimerase, putative (EC:5.1.3.1)
nr
ID XP_012070608.1
description PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Jatropha curcas]
swissprot
ID Q9SE42
description Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1
trembl
ID B9RBK5
description Ribulose-phosphate 3-epimerase OS=Ricinus communis GN=RCOM_1677790 PE=3 SV=1
Gene Ontology
ID GO:0004750
description ribulose-phosphate 3- cytoplasmic isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51708: 144860-147878 , PASA_asmbl_51709: 144845-147870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_150 0.0 - - PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Jatropha curcas]
2 Hb_118419_010 0.0835265212 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
3 Hb_000787_050 0.0958352402 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
4 Hb_008748_040 0.1016152246 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
5 Hb_004195_270 0.1048310788 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
6 Hb_032808_010 0.1055937578 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
7 Hb_000205_090 0.1058119439 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
8 Hb_003057_090 0.1063405387 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
9 Hb_008511_120 0.1083161731 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
10 Hb_003994_290 0.1084607736 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
11 Hb_002835_240 0.1089362821 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
12 Hb_000331_200 0.1092266442 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
13 Hb_002600_090 0.1100464275 - - ATP binding protein, putative [Ricinus communis]
14 Hb_150651_040 0.1102798548 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
15 Hb_001136_070 0.1137758397 - - Transmembrane protein TPARL, putative [Ricinus communis]
16 Hb_002374_570 0.1152993184 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
17 Hb_001703_060 0.1157191653 - - protein kinase, putative [Ricinus communis]
18 Hb_001579_030 0.1165595705 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
19 Hb_001629_080 0.1174056944 - - hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
20 Hb_005391_040 0.1177145271 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000627_150 Hb_000627_150 Hb_118419_010 Hb_118419_010 Hb_000627_150--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_000627_150--Hb_000787_050 Hb_008748_040 Hb_008748_040 Hb_000627_150--Hb_008748_040 Hb_004195_270 Hb_004195_270 Hb_000627_150--Hb_004195_270 Hb_032808_010 Hb_032808_010 Hb_000627_150--Hb_032808_010 Hb_000205_090 Hb_000205_090 Hb_000627_150--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_118419_010--Hb_004109_170 Hb_118419_010--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_118419_010--Hb_000580_090 Hb_118419_010--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_118419_010--Hb_001105_030 Hb_000815_320 Hb_000815_320 Hb_118419_010--Hb_000815_320 Hb_001662_070 Hb_001662_070 Hb_000787_050--Hb_001662_070 Hb_002835_240 Hb_002835_240 Hb_000787_050--Hb_002835_240 Hb_025645_010 Hb_025645_010 Hb_000787_050--Hb_025645_010 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_000787_050--Hb_118419_010 Hb_000787_050--Hb_004195_270 Hb_000025_470 Hb_000025_470 Hb_008748_040--Hb_000025_470 Hb_005357_080 Hb_005357_080 Hb_008748_040--Hb_005357_080 Hb_000212_330 Hb_000212_330 Hb_008748_040--Hb_000212_330 Hb_054865_120 Hb_054865_120 Hb_008748_040--Hb_054865_120 Hb_000054_090 Hb_000054_090 Hb_008748_040--Hb_000054_090 Hb_011671_040 Hb_011671_040 Hb_008748_040--Hb_011671_040 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_004195_270--Hb_000205_090 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420 Hb_005730_120 Hb_005730_120 Hb_032808_010--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_032808_010--Hb_005271_220 Hb_008511_120 Hb_008511_120 Hb_032808_010--Hb_008511_120 Hb_002303_070 Hb_002303_070 Hb_032808_010--Hb_002303_070 Hb_003994_290 Hb_003994_290 Hb_032808_010--Hb_003994_290 Hb_003376_330 Hb_003376_330 Hb_032808_010--Hb_003376_330 Hb_000205_090--Hb_004109_170 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.3837 20.3712 52.9137 55.2958 57.3325 24.2362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.9568 63.6448 54.6344 43.2257 41.1154

CAGE analysis