Hb_000318_020

Information

Type -
Description -
Location Contig318: 19753-21557
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10900g
description POPTRDRAFT_821219; hypothetical protein
nr
ID XP_012072443.1
description PREDICTED: sodium channel modifier 1-like [Jatropha curcas]
swissprot
ID Q2YDS5
description Sodium channel modifier 1 OS=Danio rerio GN=scnm1 PE=2 SV=1
trembl
ID A0A067KTH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04871 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33486: 20096-20822 , PASA_asmbl_33487: 21420-21538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_020 0.0 - - PREDICTED: sodium channel modifier 1-like [Jatropha curcas]
2 Hb_132835_010 0.1073460922 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
3 Hb_002609_020 0.1131394214 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
4 Hb_001632_040 0.1224532168 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
5 Hb_004907_080 0.1225163901 - - zinc finger protein, putative [Ricinus communis]
6 Hb_003813_030 0.1280910129 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
7 Hb_001703_030 0.1310427537 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
8 Hb_001009_270 0.1321782136 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
9 Hb_010422_060 0.1322694446 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
10 Hb_000342_130 0.1327147775 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
11 Hb_000069_110 0.133370327 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
12 Hb_001243_040 0.1346791326 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
13 Hb_085781_010 0.1363018573 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
14 Hb_008623_020 0.1365315013 - - PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]
15 Hb_000016_250 0.1371419373 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
16 Hb_000086_400 0.1396428329 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_114310_090 0.1406847091 - - PREDICTED: low-temperature-induced cysteine proteinase [Jatropha curcas]
18 Hb_003680_200 0.1408555662 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
19 Hb_000062_220 0.1410945294 - - BnaC02g35870D [Brassica napus]
20 Hb_004126_070 0.1412995751 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]

Gene co-expression network

sample Hb_000318_020 Hb_000318_020 Hb_132835_010 Hb_132835_010 Hb_000318_020--Hb_132835_010 Hb_002609_020 Hb_002609_020 Hb_000318_020--Hb_002609_020 Hb_001632_040 Hb_001632_040 Hb_000318_020--Hb_001632_040 Hb_004907_080 Hb_004907_080 Hb_000318_020--Hb_004907_080 Hb_003813_030 Hb_003813_030 Hb_000318_020--Hb_003813_030 Hb_001703_030 Hb_001703_030 Hb_000318_020--Hb_001703_030 Hb_010655_010 Hb_010655_010 Hb_132835_010--Hb_010655_010 Hb_004440_090 Hb_004440_090 Hb_132835_010--Hb_004440_090 Hb_000069_110 Hb_000069_110 Hb_132835_010--Hb_000069_110 Hb_132835_010--Hb_001703_030 Hb_132835_010--Hb_002609_020 Hb_001975_140 Hb_001975_140 Hb_132835_010--Hb_001975_140 Hb_004735_040 Hb_004735_040 Hb_002609_020--Hb_004735_040 Hb_001821_010 Hb_001821_010 Hb_002609_020--Hb_001821_010 Hb_009838_080 Hb_009838_080 Hb_002609_020--Hb_009838_080 Hb_000056_200 Hb_000056_200 Hb_002609_020--Hb_000056_200 Hb_000243_030 Hb_000243_030 Hb_002609_020--Hb_000243_030 Hb_002226_070 Hb_002226_070 Hb_002609_020--Hb_002226_070 Hb_004414_060 Hb_004414_060 Hb_001632_040--Hb_004414_060 Hb_002276_170 Hb_002276_170 Hb_001632_040--Hb_002276_170 Hb_114310_090 Hb_114310_090 Hb_001632_040--Hb_114310_090 Hb_001243_040 Hb_001243_040 Hb_001632_040--Hb_001243_040 Hb_001632_040--Hb_004907_080 Hb_000342_130 Hb_000342_130 Hb_001632_040--Hb_000342_130 Hb_001009_270 Hb_001009_270 Hb_004907_080--Hb_001009_270 Hb_000451_010 Hb_000451_010 Hb_004907_080--Hb_000451_010 Hb_011671_240 Hb_011671_240 Hb_004907_080--Hb_011671_240 Hb_032208_090 Hb_032208_090 Hb_004907_080--Hb_032208_090 Hb_003177_030 Hb_003177_030 Hb_004907_080--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_004907_080--Hb_000777_040 Hb_000580_090 Hb_000580_090 Hb_003813_030--Hb_000580_090 Hb_000827_050 Hb_000827_050 Hb_003813_030--Hb_000827_050 Hb_004109_170 Hb_004109_170 Hb_003813_030--Hb_004109_170 Hb_000236_040 Hb_000236_040 Hb_003813_030--Hb_000236_040 Hb_000175_340 Hb_000175_340 Hb_003813_030--Hb_000175_340 Hb_048476_110 Hb_048476_110 Hb_003813_030--Hb_048476_110 Hb_000046_280 Hb_000046_280 Hb_001703_030--Hb_000046_280 Hb_012799_180 Hb_012799_180 Hb_001703_030--Hb_012799_180 Hb_001703_030--Hb_009838_080 Hb_011867_010 Hb_011867_010 Hb_001703_030--Hb_011867_010 Hb_017904_010 Hb_017904_010 Hb_001703_030--Hb_017904_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.68548 4.64224 8.71165 5.20071 16.4211 11.1322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.38381 12.7962 17.7757 6.9724 6.04458

CAGE analysis