Hb_000270_200

Information

Type -
Description -
Location Contig270: 181833-183202
Sequence    

Annotation

kegg
ID rcu:RCOM_1513130
description ATP binding protein, putative
nr
ID XP_002511494.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID B9R919
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1513130 PE=3 SV=1
Gene Ontology
ID GO:0005524
description probable mitochondrial chaperone bcs1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_200 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_134310_010 0.185628316 - - PREDICTED: ATP-dependent DNA helicase MER3 homolog [Jatropha curcas]
3 Hb_002960_120 0.1887147342 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
4 Hb_001673_120 0.2033573844 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
5 Hb_004994_310 0.2043792452 - - Kiwellin, putative [Ricinus communis]
6 Hb_001140_200 0.208760645 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
7 Hb_011930_010 0.2131062545 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
8 Hb_002477_260 0.2155578143 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
9 Hb_000270_420 0.2164163838 - - actin binding protein, putative [Ricinus communis]
10 Hb_007741_170 0.2177161229 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
11 Hb_005298_060 0.219288427 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Malus domestica]
12 Hb_001956_050 0.2214545704 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
13 Hb_000028_470 0.2218419935 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
14 Hb_002025_230 0.2229266467 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
15 Hb_004126_010 0.2236393905 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
16 Hb_002377_040 0.2237410604 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_011496_010 0.224730007 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
18 Hb_002681_140 0.225628854 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
19 Hb_011609_030 0.2262691537 - - conserved hypothetical protein 13 [Hevea brasiliensis]
20 Hb_002942_070 0.2265507174 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_200 Hb_000270_200 Hb_134310_010 Hb_134310_010 Hb_000270_200--Hb_134310_010 Hb_002960_120 Hb_002960_120 Hb_000270_200--Hb_002960_120 Hb_001673_120 Hb_001673_120 Hb_000270_200--Hb_001673_120 Hb_004994_310 Hb_004994_310 Hb_000270_200--Hb_004994_310 Hb_001140_200 Hb_001140_200 Hb_000270_200--Hb_001140_200 Hb_011930_010 Hb_011930_010 Hb_000270_200--Hb_011930_010 Hb_003906_110 Hb_003906_110 Hb_134310_010--Hb_003906_110 Hb_011609_190 Hb_011609_190 Hb_134310_010--Hb_011609_190 Hb_004126_010 Hb_004126_010 Hb_134310_010--Hb_004126_010 Hb_003906_120 Hb_003906_120 Hb_134310_010--Hb_003906_120 Hb_002377_040 Hb_002377_040 Hb_134310_010--Hb_002377_040 Hb_000264_190 Hb_000264_190 Hb_134310_010--Hb_000264_190 Hb_094437_070 Hb_094437_070 Hb_002960_120--Hb_094437_070 Hb_002960_120--Hb_003906_110 Hb_004884_060 Hb_004884_060 Hb_002960_120--Hb_004884_060 Hb_007545_210 Hb_007545_210 Hb_002960_120--Hb_007545_210 Hb_000085_340 Hb_000085_340 Hb_002960_120--Hb_000085_340 Hb_019654_070 Hb_019654_070 Hb_002960_120--Hb_019654_070 Hb_000028_470 Hb_000028_470 Hb_001673_120--Hb_000028_470 Hb_001673_120--Hb_001140_200 Hb_009404_010 Hb_009404_010 Hb_001673_120--Hb_009404_010 Hb_057183_040 Hb_057183_040 Hb_001673_120--Hb_057183_040 Hb_005754_020 Hb_005754_020 Hb_001673_120--Hb_005754_020 Hb_178968_150 Hb_178968_150 Hb_001673_120--Hb_178968_150 Hb_000165_030 Hb_000165_030 Hb_004994_310--Hb_000165_030 Hb_000977_130 Hb_000977_130 Hb_004994_310--Hb_000977_130 Hb_002997_170 Hb_002997_170 Hb_004994_310--Hb_002997_170 Hb_004994_310--Hb_057183_040 Hb_001623_370 Hb_001623_370 Hb_004994_310--Hb_001623_370 Hb_004137_030 Hb_004137_030 Hb_004994_310--Hb_004137_030 Hb_001140_200--Hb_057183_040 Hb_001823_100 Hb_001823_100 Hb_001140_200--Hb_001823_100 Hb_001936_050 Hb_001936_050 Hb_001140_200--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_001140_200--Hb_001981_070 Hb_001140_200--Hb_000028_470 Hb_005147_110 Hb_005147_110 Hb_011930_010--Hb_005147_110 Hb_024399_010 Hb_024399_010 Hb_011930_010--Hb_024399_010 Hb_011609_030 Hb_011609_030 Hb_011930_010--Hb_011609_030 Hb_160818_010 Hb_160818_010 Hb_011930_010--Hb_160818_010 Hb_000714_020 Hb_000714_020 Hb_011930_010--Hb_000714_020 Hb_005333_020 Hb_005333_020 Hb_011930_010--Hb_005333_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101323 0.0162337 0.0256162 0 0.0489272 0.102505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0371276 0.0292067 0.0545305 0 0

CAGE analysis