Gene annotation
Transcriptome id Sobic.003G290800.3,Sobic.003G290800.4,Sobic.003G290800.2
Synonym RNEE/G
Functional annotation starch binding domain containing protein, putative, expressed
UniProt A0A1W0VZD7 , A0A1W0VZF1 , A0A1W0VZG5
Pfam PF10150 PF00686 PF10150
Panther DB PTHR30001 PTHR30001:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:2001070; starch binding GO:0003723RNA binding GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT2G04270 : RNAse E/G-like
RAP-DB (Rice) LOC_Os08g23430.1 : starch binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a005534
Brachypodium KQJ96053
Barley HORVU7Hr1G063030.3 , HORVU7Hr1G063030.2 , HORVU7Hr1G063030.1 , HORVU7Hr1G063030.7 , HORVU7Hr1G063030.6 , HORVU7Hr1G063030.5 , HORVU7Hr1G063030.4 , HORVU7Hr1G063030.9 , HORVU7Hr1G063030.8 , HORVU7Hr1G063030.13 , HORVU7Hr1G063030.12 , HORVU7Hr1G063030.11 , HORVU7Hr1G063030.10 , HORVU7Hr1G063030.14
Wheat TraesCS7D02G284200 , TraesCS7D02G284200 , TraesCS7D02G284200 , TraesCS7B02G177700 , TraesCS7A02G285800 , TraesCS7A02G285800 , TraesCS7A02G285800 , TraesCS7A02G285800 , TraesCS7A02G285800 , TraesCS7A02G285800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
2 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
3 Sobic.001G261573 - -
4 Sobic.005G118400 expressed protein -
5 Sobic.001G530900 expressed protein -
6 Sobic.010G153201 - -
7 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
8 Sobic.003G434800 PPR repeat domain containing protein, putative, expressed -
9 Sobic.003G146500 red chlorophyll catabolite reductase, putative, expressed K13545: RCCR, red chlorophyll catabolite reductase
10 Sobic.003G190000 PPR repeat domain containing protein, putative, expressed -
11 Sobic.003G085100 MYB family transcription factor, putative, expressed -
12 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
13 Sobic.001G001300 rhodanese-like domain containing protein, putative, expressed -
14 Sobic.004G354200 expressed protein -
15 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
16 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
17 Sobic.010G002700 expressed protein -
18 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
19 Sobic.006G030400 xa21, putative, expressed -
20 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase


Gene co-expression network
sample Sobic003G290800 Sobic003G290800 Sobic007G185700 Sobic007G185700 Sobic003G290800--Sobic007G185700 Sobic002G118200 Sobic002G118200 Sobic003G290800--Sobic002G118200 Sobic001G261573 Sobic001G261573 Sobic003G290800--Sobic001G261573 Sobic005G118400 Sobic005G118400 Sobic003G290800--Sobic005G118400 Sobic001G530900 Sobic001G530900 Sobic003G290800--Sobic001G530900 Sobic010G153201 Sobic010G153201 Sobic003G290800--Sobic010G153201 Sobic002G231200 Sobic002G231200 Sobic003G290800--Sobic002G231200 Sobic003G434800 Sobic003G434800 Sobic003G290800--Sobic003G434800 Sobic003G146500 Sobic003G146500 Sobic003G290800--Sobic003G146500 Sobic001G054100 Sobic001G054100 Sobic007G185700--Sobic001G054100 Sobic003G234900 Sobic003G234900 Sobic007G185700--Sobic003G234900 Sobic003G141100 Sobic003G141100 Sobic007G185700--Sobic003G141100 Sobic001G500600 Sobic001G500600 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic007G185700--Sobic001G530900 Sobic003G352500 Sobic003G352500 Sobic007G185700--Sobic003G352500 Sobic007G185700--Sobic001G261573 Sobic005G231100 Sobic005G231100 Sobic007G185700--Sobic005G231100 Sobic007G005400 Sobic007G005400 Sobic002G118200--Sobic007G005400 Sobic005G084500 Sobic005G084500 Sobic002G118200--Sobic005G084500 Sobic001G531500 Sobic001G531500 Sobic002G118200--Sobic001G531500 Sobic003G085100 Sobic003G085100 Sobic002G118200--Sobic003G085100 Sobic002G258600 Sobic002G258600 Sobic002G118200--Sobic002G258600 Sobic009G123900 Sobic009G123900 Sobic002G118200--Sobic009G123900 Sobic004G019800 Sobic004G019800 Sobic002G118200--Sobic004G019800 Sobic009G093100 Sobic009G093100 Sobic002G118200--Sobic009G093100 Sobic008G074000 Sobic008G074000 Sobic002G118200--Sobic008G074000 Sobic003G254000 Sobic003G254000 Sobic001G261573--Sobic003G254000 Sobic001G261573--Sobic007G185700 Sobic010G176550 Sobic010G176550 Sobic001G261573--Sobic010G176550 Sobic001G261573--Sobic002G231200 Sobic005G039500 Sobic005G039500 Sobic001G261573--Sobic005G039500 Sobic006G058100 Sobic006G058100 Sobic001G261573--Sobic006G058100 Sobic001G261573--Sobic003G234900 Sobic003G161000 Sobic003G161000 Sobic001G261573--Sobic003G161000 Sobic009G209300 Sobic009G209300 Sobic001G261573--Sobic009G209300 Sobic010G002700 Sobic010G002700 Sobic005G118400--Sobic010G002700 Sobic005G068700 Sobic005G068700 Sobic005G118400--Sobic005G068700 Sobic001G378100 Sobic001G378100 Sobic005G118400--Sobic001G378100 Sobic001G540600 Sobic001G540600 Sobic005G118400--Sobic001G540600 Sobic003G185900 Sobic003G185900 Sobic005G118400--Sobic003G185900 Sobic001G504400 Sobic001G504400 Sobic005G118400--Sobic001G504400 Sobic008G033000 Sobic008G033000 Sobic005G118400--Sobic008G033000 Sobic005G118400--Sobic001G530900 Sobic002G056500 Sobic002G056500 Sobic005G118400--Sobic002G056500 Sobic001G530900--Sobic010G002700 Sobic009G215500 Sobic009G215500 Sobic001G530900--Sobic009G215500 Sobic001G530900--Sobic001G378100 Sobic001G530900--Sobic007G185700 Sobic001G530900--Sobic005G118400 Sobic001G530900--Sobic005G084500 Sobic003G332700 Sobic003G332700 Sobic001G530900--Sobic003G332700 Sobic001G465700 Sobic001G465700 Sobic001G530900--Sobic001G465700 Sobic001G530900--Sobic003G217700 Sobic002G097700 Sobic002G097700 Sobic010G153201--Sobic002G097700 Sobic010G153201--Sobic005G118400 Sobic010G153201--Sobic001G540600 Sobic010G153201--Sobic001G530900 Sobic002G073250 Sobic002G073250 Sobic010G153201--Sobic002G073250 Sobic010G153201--Sobic001G378100 Sobic004G179400 Sobic004G179400 Sobic010G153201--Sobic004G179400 Sobic010G153201--Sobic010G002700 Sobic010G153201--Sobic007G185700 Sobic001G327800 Sobic001G327800 Sobic002G231200--Sobic001G327800 Sobic002G231200--Sobic001G261573 Sobic003G343400 Sobic003G343400 Sobic002G231200--Sobic003G343400 Sobic002G231200--Sobic003G234900 Sobic006G010900 Sobic006G010900 Sobic002G231200--Sobic006G010900 Sobic002G231200--Sobic003G085100 Sobic002G231200--Sobic001G531500 Sobic002G231200--Sobic002G118200 Sobic003G150800 Sobic003G150800 Sobic002G231200--Sobic003G150800 Sobic003G434800--Sobic003G290800 Sobic002G413600 Sobic002G413600 Sobic003G434800--Sobic002G413600 Sobic010G110400 Sobic010G110400 Sobic003G434800--Sobic010G110400 Sobic003G434800--Sobic002G118200 Sobic003G203300 Sobic003G203300 Sobic003G434800--Sobic003G203300 Sobic007G192600 Sobic007G192600 Sobic003G434800--Sobic007G192600 Sobic003G434800--Sobic005G118400 Sobic001G219700 Sobic001G219700 Sobic003G434800--Sobic001G219700 Sobic003G379400 Sobic003G379400 Sobic003G434800--Sobic003G379400 Sobic003G146500--Sobic002G118200 Sobic003G146500--Sobic001G531500 Sobic004G070500 Sobic004G070500 Sobic003G146500--Sobic004G070500 Sobic007G090403 Sobic007G090403 Sobic003G146500--Sobic007G090403 Sobic001G512500 Sobic001G512500 Sobic003G146500--Sobic001G512500 Sobic006G133900 Sobic006G133900 Sobic003G146500--Sobic006G133900 Sobic003G146500--Sobic009G123900 Sobic003G146500--Sobic005G118400 Sobic003G146500--Sobic009G093100
Octagon: transcription factors


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