Gene annotation
Transcriptome id Sobic.003G146500.2,Sobic.003G146500.1
Synonym Sb03g012660, ATRCCR, ACD2
Functional annotation red chlorophyll catabolite reductase, putative, expressed
UniProt C5XIR5 , A0A1W0VXB7
Pfam PF06405
Panther DB PTHR34685 PTHR34685:SF2
NCBI CDD -
KEGG Orthology K13545; RCCR, red chlorophyll catabolite reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37000 : accelerated cell death 2 (ACD2)
RAP-DB (Rice) LOC_Os10g25030.1 : red chlorophyll catabolite reductase, putative, expressed
MaizeGDB (Corn) Zm00025a004044
Brachypodium -
Barley HORVU7Hr1G113230.1
Wheat TraesCS7D02G492300
Populus -


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cDNA sequences
Sobic.003G146500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
2 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
3 Sobic.004G070500 expressed protein -
4 Sobic.007G090403 - -
5 Sobic.001G512500 expressed protein -
6 Sobic.006G133900 NIN, putative, expressed -
7 Sobic.009G123900 L1P family of ribosomal proteins domain containing protein, expressed K02863: RP-L1, MRPL1, large subunit ribosomal protein L1
8 Sobic.005G118400 expressed protein -
9 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
10 Sobic.006G065600 expressed protein -
11 Sobic.004G181600 calmodulin binding protein, putative, expressed -
12 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
13 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
14 Sobic.008G094000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
15 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
16 Sobic.003G343500 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
17 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
18 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
19 Sobic.002G190300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
20 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase


Gene co-expression network
sample Sobic003G146500 Sobic003G146500 Sobic002G118200 Sobic002G118200 Sobic003G146500--Sobic002G118200 Sobic001G531500 Sobic001G531500 Sobic003G146500--Sobic001G531500 Sobic004G070500 Sobic004G070500 Sobic003G146500--Sobic004G070500 Sobic007G090403 Sobic007G090403 Sobic003G146500--Sobic007G090403 Sobic001G512500 Sobic001G512500 Sobic003G146500--Sobic001G512500 Sobic006G133900 Sobic006G133900 Sobic003G146500--Sobic006G133900 Sobic009G123900 Sobic009G123900 Sobic003G146500--Sobic009G123900 Sobic005G118400 Sobic005G118400 Sobic003G146500--Sobic005G118400 Sobic009G093100 Sobic009G093100 Sobic003G146500--Sobic009G093100 Sobic007G005400 Sobic007G005400 Sobic002G118200--Sobic007G005400 Sobic005G084500 Sobic005G084500 Sobic002G118200--Sobic005G084500 Sobic002G118200--Sobic001G531500 Sobic003G085100 Sobic003G085100 Sobic002G118200--Sobic003G085100 Sobic002G258600 Sobic002G258600 Sobic002G118200--Sobic002G258600 Sobic002G118200--Sobic009G123900 Sobic004G019800 Sobic004G019800 Sobic002G118200--Sobic004G019800 Sobic002G118200--Sobic009G093100 Sobic008G074000 Sobic008G074000 Sobic002G118200--Sobic008G074000 Sobic001G531500--Sobic002G118200 Sobic006G064100 Sobic006G064100 Sobic001G531500--Sobic006G064100 Sobic002G403600 Sobic002G403600 Sobic001G531500--Sobic002G403600 Sobic001G073900 Sobic001G073900 Sobic001G531500--Sobic001G073900 Sobic010G205100 Sobic010G205100 Sobic001G531500--Sobic010G205100 Sobic001G531500--Sobic009G123900 Sobic005G001700 Sobic005G001700 Sobic001G531500--Sobic005G001700 Sobic008G001900 Sobic008G001900 Sobic001G531500--Sobic008G001900 Sobic003G332700 Sobic003G332700 Sobic001G531500--Sobic003G332700 Sobic001G375100 Sobic001G375100 Sobic004G070500--Sobic001G375100 Sobic007G010700 Sobic007G010700 Sobic004G070500--Sobic007G010700 Sobic004G070500--Sobic003G146500 Sobic004G034600 Sobic004G034600 Sobic004G070500--Sobic004G034600 Sobic004G325100 Sobic004G325100 Sobic004G070500--Sobic004G325100 Sobic002G124600 Sobic002G124600 Sobic004G070500--Sobic002G124600 Sobic003G247500 Sobic003G247500 Sobic004G070500--Sobic003G247500 Sobic007G193700 Sobic007G193700 Sobic004G070500--Sobic007G193700 Sobic005G053200 Sobic005G053200 Sobic004G070500--Sobic005G053200 Sobic005G068700 Sobic005G068700 Sobic007G090403--Sobic005G068700 Sobic002G244200 Sobic002G244200 Sobic007G090403--Sobic002G244200 Sobic006G219600 Sobic006G219600 Sobic007G090403--Sobic006G219600 Sobic001G062900 Sobic001G062900 Sobic007G090403--Sobic001G062900 Sobic005G149200 Sobic005G149200 Sobic007G090403--Sobic005G149200 Sobic001G133000 Sobic001G133000 Sobic007G090403--Sobic001G133000 Sobic007G090403--Sobic009G123900 Sobic006G065100 Sobic006G065100 Sobic007G090403--Sobic006G065100 Sobic009G215500 Sobic009G215500 Sobic007G090403--Sobic009G215500 Sobic004G054400 Sobic004G054400 Sobic001G512500--Sobic004G054400 Sobic001G032700 Sobic001G032700 Sobic001G512500--Sobic001G032700 Sobic001G124800 Sobic001G124800 Sobic001G512500--Sobic001G124800 Sobic003G014300 Sobic003G014300 Sobic001G512500--Sobic003G014300 Sobic004G298900 Sobic004G298900 Sobic001G512500--Sobic004G298900 Sobic003G343500 Sobic003G343500 Sobic001G512500--Sobic003G343500 Sobic010G058200 Sobic010G058200 Sobic001G512500--Sobic010G058200 Sobic004G026500 Sobic004G026500 Sobic001G512500--Sobic004G026500 Sobic003G037300 Sobic003G037300 Sobic001G512500--Sobic003G037300 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic003G155100 Sobic003G155100 Sobic006G133900--Sobic003G155100 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic009G123900--Sobic002G118200 Sobic009G123900--Sobic005G068700 Sobic002G056500 Sobic002G056500 Sobic009G123900--Sobic002G056500 Sobic003G036200 Sobic003G036200 Sobic009G123900--Sobic003G036200 Sobic009G123900--Sobic001G531500 Sobic009G123900--Sobic004G019800 Sobic002G402700 Sobic002G402700 Sobic009G123900--Sobic002G402700 Sobic009G123900--Sobic007G005400 Sobic004G268300 Sobic004G268300 Sobic009G123900--Sobic004G268300 Sobic010G002700 Sobic010G002700 Sobic005G118400--Sobic010G002700 Sobic005G118400--Sobic005G068700 Sobic001G378100 Sobic001G378100 Sobic005G118400--Sobic001G378100 Sobic001G540600 Sobic001G540600 Sobic005G118400--Sobic001G540600 Sobic003G185900 Sobic003G185900 Sobic005G118400--Sobic003G185900 Sobic001G504400 Sobic001G504400 Sobic005G118400--Sobic001G504400 Sobic008G033000 Sobic008G033000 Sobic005G118400--Sobic008G033000 Sobic001G530900 Sobic001G530900 Sobic005G118400--Sobic001G530900 Sobic005G118400--Sobic002G056500 Sobic001G077300 Sobic001G077300 Sobic009G093100--Sobic001G077300 Sobic001G359300 Sobic001G359300 Sobic009G093100--Sobic001G359300 Sobic009G093100--Sobic004G019800 Sobic009G093100--Sobic006G065100 Sobic001G536700 Sobic001G536700 Sobic009G093100--Sobic001G536700 Sobic009G073900 Sobic009G073900 Sobic009G093100--Sobic009G073900 Sobic009G093100--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic009G093100--Sobic002G206300 Sobic001G333800 Sobic001G333800 Sobic009G093100--Sobic001G333800
Octagon: transcription factors


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