Gene annotation
Transcriptome id Sobic.002G124600.18,Sobic.002G124600.22,Sobic.002G124600.14,Sobic.002G124600.11,Sobic.002G124600.19,Sobic.002G124600.10,Sobic.002G124600.20,Sobic.002G124600.16,Sobic.002G124600.23,Sobic.002G124600.3,Sobic.002G124600.6,Sobic.002G124600.9,Sobic.002G124600.15,Sobic.002G124600.1,Sobic.002G124600.4,Sobic.002G124600.24,Sobic.002G124600.8,Sobic.002G124600.7,Sobic.002G124600.12,Sobic.002G124600.21,Sobic.002G124600.5,Sobic.002G124600.13,Sobic.002G124600.2,Sobic.002G124600.17
Synonym SUA, Sb02g010740
Functional annotation RNA recognition motif family protein, expressed
UniProt A0A1W0W3K2 , A0A1B6QAU1 , A0A1W0W3J6 , A0A1B6QAT4 , A0A1W0W3J7 , A0A1B6QAT5 , A0A1W0W3N3 , A0A1B6QAT8 , A0A1B6QAX1 , A0A1W0W3H5 , A0A1W0W3G7 , A0A1B6QAT7 , A0A1B6QAW9 , A0A1W0W3H8 , A0A1W0W3M7 , A0A1W0W3I1 , A0A1W0W3I7 , A0A1W0W3K9 , A0A1W0W3H6 , A0A1W0W3N7 , A0A1W0W3J3 , A0A1B6QAT6 , A0A1W0W3M0 , A0A1W0W3M5
Pfam PF01585 PF00076 PF00076
Panther DB PTHR13948 PTHR13948:SF3
NCBI CDD KOG0154; RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains KOG0148Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology K13094; RNA-binding protein 5/10
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G54230 : suppressor of abi3-5
RAP-DB (Rice) LOC_Os02g07070.1 : RNA recognition motif family protein, expressed
MaizeGDB (Corn) Zm00025a038995 , Zm00025a045835
Brachypodium KQK08667 , KQK08668
Barley HORVU3Hr1G089330.18 , HORVU3Hr1G089330.10 , HORVU3Hr1G089330.11 , HORVU3Hr1G089330.16 , HORVU3Hr1G089330.17 , HORVU3Hr1G089330.14 , HORVU3Hr1G089330.1 , HORVU3Hr1G089330.2 , HORVU3Hr1G089330.3 , HORVU3Hr1G089330.4 , HORVU3Hr1G089330.5 , HORVU3Hr1G089330.7 , HORVU3Hr1G089330.8 , HORVU3Hr1G089330.9 , HORVU3Hr1G089330.43 , HORVU3Hr1G089330.42 , HORVU3Hr1G089330.45 , HORVU3Hr1G089330.47 , HORVU3Hr1G089330.46 , HORVU3Hr1G089330.48 , HORVU3Hr1G089330.23 , HORVU3Hr1G089330.22 , HORVU3Hr1G089330.21 , HORVU3Hr1G089330.20 , HORVU3Hr1G089330.26 , HORVU3Hr1G089330.25 , HORVU3Hr1G089330.28 , HORVU3Hr1G089330.30 , HORVU3Hr1G089330.31 , HORVU3Hr1G089330.33 , HORVU3Hr1G089330.35 , HORVU3Hr1G089330.36 , HORVU3Hr1G089330.37 , HORVU3Hr1G089330.38 , HORVU3Hr1G089330.39
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
2 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
3 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
4 Sobic.006G133900 NIN, putative, expressed -
5 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
6 Sobic.001G298900 agenet domain containing protein, putative, expressed -
7 Sobic.008G130100 protein kinase family protein, putative, expressed -
8 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
9 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
10 Sobic.004G181600 calmodulin binding protein, putative, expressed -
11 Sobic.004G143475 - -
12 Sobic.002G117500 sterol 3-beta-glucosyltransferase, putative, expressed K05841: sterol 3beta-glucosyltransferase
13 Sobic.008G166400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
15 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
16 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
17 Sobic.007G090403 - -
18 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
19 Sobic.004G070500 expressed protein -
20 Sobic.002G379750 - -


Gene co-expression network
sample Sobic002G124600 Sobic002G124600 Sobic006G219600 Sobic006G219600 Sobic002G124600--Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic002G124600--Sobic003G155100 Sobic001G375100 Sobic001G375100 Sobic002G124600--Sobic001G375100 Sobic006G133900 Sobic006G133900 Sobic002G124600--Sobic006G133900 Sobic008G001200 Sobic008G001200 Sobic002G124600--Sobic008G001200 Sobic001G298900 Sobic001G298900 Sobic002G124600--Sobic001G298900 Sobic008G130100 Sobic008G130100 Sobic002G124600--Sobic008G130100 Sobic004G174200 Sobic004G174200 Sobic002G124600--Sobic004G174200 Sobic004G356700 Sobic004G356700 Sobic002G124600--Sobic004G356700 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic006G219600--Sobic001G298900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic001G375100--Sobic003G155100 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic008G001200--Sobic004G276400 Sobic008G001200--Sobic004G174200 Sobic001G298900--Sobic001G230000 Sobic001G298900--Sobic006G219600 Sobic002G198200 Sobic002G198200 Sobic001G298900--Sobic002G198200 Sobic004G178500 Sobic004G178500 Sobic001G298900--Sobic004G178500 Sobic001G298900--Sobic003G155100 Sobic008G044100 Sobic008G044100 Sobic001G298900--Sobic008G044100 Sobic003G388100 Sobic003G388100 Sobic001G298900--Sobic003G388100 Sobic005G142800 Sobic005G142800 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600 Sobic001G365900 Sobic001G365900 Sobic008G130100--Sobic001G365900 Sobic008G130100--Sobic001G454500 Sobic008G130100--Sobic006G133900 Sobic008G130100--Sobic010G010700 Sobic008G130100--Sobic003G155100 Sobic004G034900 Sobic004G034900 Sobic008G130100--Sobic004G034900 Sobic002G346200 Sobic002G346200 Sobic008G130100--Sobic002G346200 Sobic008G130100--Sobic010G206900 Sobic008G130100--Sobic007G198300 Sobic004G174200--Sobic004G291900 Sobic002G411600 Sobic002G411600 Sobic004G174200--Sobic002G411600 Sobic004G174200--Sobic008G001200 Sobic004G174200--Sobic010G206900 Sobic004G174200--Sobic002G008900 Sobic001G289800 Sobic001G289800 Sobic004G174200--Sobic001G289800 Sobic004G174200--Sobic005G001000 Sobic003G422500 Sobic003G422500 Sobic004G174200--Sobic003G422500 Sobic004G174200--Sobic001G194200 Sobic004G356700--Sobic008G001200 Sobic004G356700--Sobic001G194200 Sobic002G146300 Sobic002G146300 Sobic004G356700--Sobic002G146300 Sobic004G001500 Sobic004G001500 Sobic004G356700--Sobic004G001500 Sobic004G356700--Sobic009G256400 Sobic004G244900 Sobic004G244900 Sobic004G356700--Sobic004G244900 Sobic004G356700--Sobic003G155100 Sobic004G356700--Sobic006G219600 Sobic004G334300 Sobic004G334300 Sobic004G356700--Sobic004G334300
Octagon: transcription factors


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