Gene annotation
Transcriptome id Sobic.007G193700.3,Sobic.007G193700.2,Sobic.007G193700.1
Synonym Sb07g026230
Functional annotation Sua5/YciO/YrdC/YwlC family protein, putative, expressed
UniProt A0A1Z5RBR7 , A0A1Z5RBK7 , C5YHT0
Pfam PF01300
Panther DB PTHR17490 PTHR17490:SF7
NCBI CDD KOG3051; RNA binding/translational regulation protein of the SUA5 family
KEGG Orthology -
Gene Ontology GO:0003725; double-stranded RNA binding


Orthologs (automatic annotation)
TAIR AT3G01920 : DHBP synthase RibB-like alpha/beta domain
RAP-DB (Rice) LOC_Os08g41910.1 : Sua5/YciO/YrdC/YwlC family protein, putative, expressed
MaizeGDB (Corn) Zm00025a030400
Brachypodium KQJ99050
Barley HORVU7Hr1G054190.21 , HORVU7Hr1G054190.20 , HORVU7Hr1G054190.22 , HORVU7Hr1G054190.25 , HORVU7Hr1G054190.24 , HORVU7Hr1G054190.8 , HORVU7Hr1G054190.9 , HORVU7Hr1G054190.6 , HORVU7Hr1G054190.7 , HORVU7Hr1G054190.4 , HORVU7Hr1G054190.2 , HORVU7Hr1G054190.14 , HORVU7Hr1G054190.17 , HORVU7Hr1G054190.11 , HORVU7Hr1G054190.12 , HORVU7Hr1G054190.13 , HORVU7Hr1G054190.18 , HORVU7Hr1G054190.19
Wheat TraesCS7D02G261400 , TraesCS7B02G158400 , TraesCS7B02G158400 , TraesCS7A02G260400 , TraesCS7A02G260400 , TraesCS7A02G260400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
2 Sobic.003G086900 C2 domain containing protein, putative, expressed -
3 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
4 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
5 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
6 Sobic.010G239600 RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed K15216: RRN3, RNA polymerase I-specific transcription initiation factor RRN3
7 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
8 Sobic.003G247500 expressed protein -
9 Sobic.003G396200 expressed protein K13146: integrator complex subunit 9
10 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
11 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
12 Sobic.010G256700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.001G159400 protein kinase domain containing protein, expressed -
14 Sobic.001G365900 PWWP domain containing protein, expressed -
15 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
16 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
17 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
18 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
19 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
20 Sobic.009G191000 MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic007G193700 Sobic007G193700 Sobic004G263600 Sobic004G263600 Sobic007G193700--Sobic004G263600 Sobic003G086900 Sobic003G086900 Sobic007G193700--Sobic003G086900 Sobic004G200200 Sobic004G200200 Sobic007G193700--Sobic004G200200 Sobic004G174200 Sobic004G174200 Sobic007G193700--Sobic004G174200 Sobic002G134200 Sobic002G134200 Sobic007G193700--Sobic002G134200 Sobic010G239600 Sobic010G239600 Sobic007G193700--Sobic010G239600 Sobic003G139900 Sobic003G139900 Sobic007G193700--Sobic003G139900 Sobic003G247500 Sobic003G247500 Sobic007G193700--Sobic003G247500 Sobic003G396200 Sobic003G396200 Sobic007G193700--Sobic003G396200 Sobic004G263600--Sobic007G193700 Sobic004G263600--Sobic004G174200 Sobic001G194200 Sobic001G194200 Sobic004G263600--Sobic001G194200 Sobic006G055200 Sobic006G055200 Sobic004G263600--Sobic006G055200 Sobic004G291900 Sobic004G291900 Sobic004G263600--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic004G263600--Sobic005G001000 Sobic008G001200 Sobic008G001200 Sobic004G263600--Sobic008G001200 Sobic001G072500 Sobic001G072500 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic010G196500 Sobic010G196500 Sobic003G086900--Sobic010G196500 Sobic003G086900--Sobic004G174200 Sobic001G016700 Sobic001G016700 Sobic003G086900--Sobic001G016700 Sobic001G390800 Sobic001G390800 Sobic003G086900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic003G086900--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic002G045600 Sobic002G045600 Sobic004G200200--Sobic002G045600 Sobic001G146800 Sobic001G146800 Sobic004G200200--Sobic001G146800 Sobic004G200200--Sobic003G139900 Sobic003G408600 Sobic003G408600 Sobic004G200200--Sobic003G408600 Sobic002G008900 Sobic002G008900 Sobic004G200200--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic004G200200--Sobic009G191000 Sobic001G058700 Sobic001G058700 Sobic004G200200--Sobic001G058700 Sobic001G289800 Sobic001G289800 Sobic004G200200--Sobic001G289800 Sobic004G200200--Sobic003G422500 Sobic004G174200--Sobic004G291900 Sobic002G411600 Sobic002G411600 Sobic004G174200--Sobic002G411600 Sobic004G174200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic004G174200--Sobic010G206900 Sobic004G174200--Sobic002G008900 Sobic004G174200--Sobic001G289800 Sobic004G174200--Sobic005G001000 Sobic004G174200--Sobic003G422500 Sobic004G174200--Sobic001G194200 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G309600 Sobic002G309600 Sobic002G134200--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic002G134200--Sobic009G191000 Sobic002G134200--Sobic002G008900 Sobic010G239600--Sobic007G193700 Sobic010G239600--Sobic006G055200 Sobic010G112000 Sobic010G112000 Sobic010G239600--Sobic010G112000 Sobic010G239600--Sobic002G008900 Sobic010G239600--Sobic004G263600 Sobic010G010700 Sobic010G010700 Sobic010G239600--Sobic010G010700 Sobic002G169633 Sobic002G169633 Sobic010G239600--Sobic002G169633 Sobic010G239600--Sobic005G001000 Sobic001G454500 Sobic001G454500 Sobic010G239600--Sobic001G454500 Sobic003G139900--Sobic004G200200 Sobic005G027400 Sobic005G027400 Sobic003G139900--Sobic005G027400 Sobic003G139900--Sobic007G193700 Sobic003G139900--Sobic002G134200 Sobic003G139900--Sobic009G191000 Sobic001G260400 Sobic001G260400 Sobic003G139900--Sobic001G260400 Sobic003G313500 Sobic003G313500 Sobic003G139900--Sobic003G313500 Sobic010G143800 Sobic010G143800 Sobic003G139900--Sobic010G143800 Sobic003G139900--Sobic004G263600 Sobic003G247500--Sobic001G194200 Sobic003G247500--Sobic008G001200 Sobic001G375100 Sobic001G375100 Sobic003G247500--Sobic001G375100 Sobic003G247500--Sobic010G010700 Sobic003G247500--Sobic006G055200 Sobic003G247500--Sobic001G454500 Sobic010G123600 Sobic010G123600 Sobic003G247500--Sobic010G123600 Sobic002G325300 Sobic002G325300 Sobic003G247500--Sobic002G325300 Sobic003G247500--Sobic005G001000 Sobic010G256700 Sobic010G256700 Sobic003G396200--Sobic010G256700 Sobic003G396200--Sobic007G193700 Sobic001G159400 Sobic001G159400 Sobic003G396200--Sobic001G159400 Sobic007G116200 Sobic007G116200 Sobic003G396200--Sobic007G116200 Sobic006G131500 Sobic006G131500 Sobic003G396200--Sobic006G131500 Sobic002G127550 Sobic002G127550 Sobic003G396200--Sobic002G127550 Sobic004G209600 Sobic004G209600 Sobic003G396200--Sobic004G209600 Sobic003G396200--Sobic001G375100 Sobic003G396200--Sobic006G216800
Octagon: transcription factors


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