Gene annotation
Transcriptome id Sobic.003G247500.1
Synonym Sb03g030390
Functional annotation expressed protein
UniProt C5XFY0
Pfam PF01544
Panther DB PTHR21535 PTHR21535:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G29820 : Magnesium transporter CorA-like family protein
RAP-DB (Rice) LOC_Os01g47460.1 : expressed protein
MaizeGDB (Corn) Zm00025a038739
Brachypodium KQK09069
Barley HORVU3Hr1G060290.4 , HORVU3Hr1G060290.5 , HORVU3Hr1G060290.2 , HORVU3Hr1G060290.3 , HORVU3Hr1G060290.1
Wheat TraesCS3D02G241800 , TraesCS3D02G241800 , TraesCS3A02G241600 , TraesCS3B02G269800
Populus -


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cDNA sequences
Sobic.003G247500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
2 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
3 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
4 Sobic.010G010700 PHD-finger family protein, expressed -
5 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
6 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
7 Sobic.010G123600 WW domain containing protein, expressed -
8 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
9 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
10 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
11 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
12 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
13 Sobic.003G170900 - -
14 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
15 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
16 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
17 Sobic.009G191000 MATH domain containing protein, expressed -
18 Sobic.006G133900 NIN, putative, expressed -
19 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
20 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -


Gene co-expression network
sample Sobic003G247500 Sobic003G247500 Sobic001G194200 Sobic001G194200 Sobic003G247500--Sobic001G194200 Sobic008G001200 Sobic008G001200 Sobic003G247500--Sobic008G001200 Sobic001G375100 Sobic001G375100 Sobic003G247500--Sobic001G375100 Sobic010G010700 Sobic010G010700 Sobic003G247500--Sobic010G010700 Sobic006G055200 Sobic006G055200 Sobic003G247500--Sobic006G055200 Sobic001G454500 Sobic001G454500 Sobic003G247500--Sobic001G454500 Sobic010G123600 Sobic010G123600 Sobic003G247500--Sobic010G123600 Sobic002G325300 Sobic002G325300 Sobic003G247500--Sobic002G325300 Sobic005G001000 Sobic005G001000 Sobic003G247500--Sobic005G001000 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic009G256400 Sobic009G256400 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic001G375100--Sobic003G155100 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic001G375100--Sobic003G247500 Sobic001G375100--Sobic001G454500 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic001G375100--Sobic005G001000 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic006G055200--Sobic001G194200 Sobic006G055200--Sobic010G010700 Sobic006G055200--Sobic005G001000 Sobic006G055200--Sobic004G276400 Sobic006G055200--Sobic004G291900 Sobic006G055200--Sobic003G186000 Sobic006G055200--Sobic001G289800 Sobic004G263600 Sobic004G263600 Sobic006G055200--Sobic004G263600 Sobic001G002000 Sobic001G002000 Sobic006G055200--Sobic001G002000 Sobic003G388100 Sobic003G388100 Sobic001G454500--Sobic003G388100 Sobic008G130100 Sobic008G130100 Sobic001G454500--Sobic008G130100 Sobic006G133900 Sobic006G133900 Sobic001G454500--Sobic006G133900 Sobic001G454500--Sobic001G375100 Sobic001G365900 Sobic001G365900 Sobic001G454500--Sobic001G365900 Sobic001G454500--Sobic008G001200 Sobic001G454500--Sobic010G010700 Sobic001G454500--Sobic003G155100 Sobic001G454500--Sobic003G247500 Sobic010G123600--Sobic010G010700 Sobic009G256300 Sobic009G256300 Sobic010G123600--Sobic009G256300 Sobic003G170900 Sobic003G170900 Sobic010G123600--Sobic003G170900 Sobic005G167700 Sobic005G167700 Sobic010G123600--Sobic005G167700 Sobic010G123600--Sobic005G112300 Sobic001G433800 Sobic001G433800 Sobic010G123600--Sobic001G433800 Sobic010G112100 Sobic010G112100 Sobic010G123600--Sobic010G112100 Sobic010G123600--Sobic001G194200 Sobic010G123600--Sobic008G001200 Sobic006G185100 Sobic006G185100 Sobic002G325300--Sobic006G185100 Sobic002G325300--Sobic001G194200 Sobic006G252900 Sobic006G252900 Sobic002G325300--Sobic006G252900 Sobic002G325300--Sobic003G247500 Sobic003G119600 Sobic003G119600 Sobic002G325300--Sobic003G119600 Sobic006G041600 Sobic006G041600 Sobic002G325300--Sobic006G041600 Sobic002G325300--Sobic008G001200 Sobic004G244900 Sobic004G244900 Sobic002G325300--Sobic004G244900 Sobic002G325300--Sobic009G256400 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400
Octagon: transcription factors


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