Gene annotation
Transcriptome id Sobic.010G256700.5,Sobic.010G256700.6,Sobic.010G256700.4,Sobic.010G256700.1
Synonym Sb10g029390
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5Z9B3 , A0A1W0VUT1
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF173
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G52450 : MATE efflux family protein
RAP-DB (Rice) LOC_Os06g49310.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a041761
Brachypodium KQK17472
Barley HORVU7Hr1G095900.21 , HORVU7Hr1G095900.20 , HORVU7Hr1G095900.23 , HORVU7Hr1G095900.22 , HORVU7Hr1G095900.25 , HORVU7Hr1G095900.24 , HORVU7Hr1G095900.27 , HORVU7Hr1G095900.26 , HORVU7Hr1G095900.29 , HORVU7Hr1G095900.28 , HORVU7Hr1G095900.36 , HORVU7Hr1G095900.37 , HORVU7Hr1G095900.34 , HORVU7Hr1G095900.35 , HORVU7Hr1G095900.32 , HORVU7Hr1G095900.33 , HORVU7Hr1G095900.30 , HORVU7Hr1G095900.31 , HORVU7Hr1G095900.38 , HORVU7Hr1G095900.39 , HORVU7Hr1G095900.43 , HORVU7Hr1G095900.42 , HORVU7Hr1G095900.41 , HORVU7Hr1G095900.40 , HORVU7Hr1G095900.46 , HORVU7Hr1G095900.45 , HORVU7Hr1G095900.44 , HORVU7Hr1G095900.49 , HORVU7Hr1G095900.48 , HORVU7Hr1G095900.4 , HORVU7Hr1G095900.5 , HORVU7Hr1G095900.1 , HORVU7Hr1G095900.18 , HORVU7Hr1G095900.19 , HORVU7Hr1G095900.14 , HORVU7Hr1G095900.15 , HORVU7Hr1G095900.16 , HORVU7Hr1G095900.17 , HORVU7Hr1G095900.10 , HORVU7Hr1G095900.11 , HORVU7Hr1G095900.12 , HORVU7Hr1G095900.13 , HORVU7Hr1G095900.6 , HORVU7Hr1G095900.7 , HORVU7Hr1G095900.2 , HORVU7Hr1G095900.3 , HORVU7Hr1G095900.8 , HORVU7Hr1G095900.9
Wheat TraesCS7B02G311000 , TraesCS7A02G411800 , TraesCS7D02G405000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
2 Sobic.003G396200 expressed protein K13146: integrator complex subunit 9
3 Sobic.006G182900 expressed protein -
4 Sobic.001G159400 protein kinase domain containing protein, expressed -
5 Sobic.010G248700 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
6 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
7 Sobic.006G133900 NIN, putative, expressed -
8 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
9 Sobic.002G104100 FYVE zinc finger domain containing protein, expressed -
10 Sobic.004G096600 - -
11 Sobic.010G112000 expressed protein K17906: autophagy-related protein 2
12 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
13 Sobic.001G365900 PWWP domain containing protein, expressed -
14 Sobic.010G239600 RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed K15216: RRN3, RNA polymerase I-specific transcription initiation factor RRN3
15 Sobic.008G130100 protein kinase family protein, putative, expressed -
16 Sobic.004G317100 DENN domain containing protein, expressed -
17 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
18 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
19 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
20 Sobic.004G181600 calmodulin binding protein, putative, expressed -


Gene co-expression network
sample Sobic010G256700 Sobic010G256700 Sobic007G116200 Sobic007G116200 Sobic010G256700--Sobic007G116200 Sobic003G396200 Sobic003G396200 Sobic010G256700--Sobic003G396200 Sobic006G182900 Sobic006G182900 Sobic010G256700--Sobic006G182900 Sobic001G159400 Sobic001G159400 Sobic010G256700--Sobic001G159400 Sobic010G248700 Sobic010G248700 Sobic010G256700--Sobic010G248700 Sobic007G193700 Sobic007G193700 Sobic010G256700--Sobic007G193700 Sobic006G133900 Sobic006G133900 Sobic010G256700--Sobic006G133900 Sobic001G454500 Sobic001G454500 Sobic010G256700--Sobic001G454500 Sobic002G104100 Sobic002G104100 Sobic010G256700--Sobic002G104100 Sobic006G216800 Sobic006G216800 Sobic007G116200--Sobic006G216800 Sobic010G010700 Sobic010G010700 Sobic007G116200--Sobic010G010700 Sobic002G134200 Sobic002G134200 Sobic007G116200--Sobic002G134200 Sobic007G116200--Sobic006G182900 Sobic004G359800 Sobic004G359800 Sobic007G116200--Sobic004G359800 Sobic010G139000 Sobic010G139000 Sobic007G116200--Sobic010G139000 Sobic007G116200--Sobic010G256700 Sobic004G209600 Sobic004G209600 Sobic007G116200--Sobic004G209600 Sobic003G280800 Sobic003G280800 Sobic007G116200--Sobic003G280800 Sobic003G396200--Sobic010G256700 Sobic003G396200--Sobic007G193700 Sobic003G396200--Sobic001G159400 Sobic003G396200--Sobic007G116200 Sobic006G131500 Sobic006G131500 Sobic003G396200--Sobic006G131500 Sobic002G127550 Sobic002G127550 Sobic003G396200--Sobic002G127550 Sobic003G396200--Sobic004G209600 Sobic001G375100 Sobic001G375100 Sobic003G396200--Sobic001G375100 Sobic003G396200--Sobic006G216800 Sobic003G429650 Sobic003G429650 Sobic006G182900--Sobic003G429650 Sobic006G048500 Sobic006G048500 Sobic006G182900--Sobic006G048500 Sobic007G161000 Sobic007G161000 Sobic006G182900--Sobic007G161000 Sobic001G365900 Sobic001G365900 Sobic006G182900--Sobic001G365900 Sobic006G182900--Sobic007G116200 Sobic004G096600 Sobic004G096600 Sobic006G182900--Sobic004G096600 Sobic006G182900--Sobic002G134200 Sobic001G214300 Sobic001G214300 Sobic006G182900--Sobic001G214300 Sobic009G209300 Sobic009G209300 Sobic006G182900--Sobic009G209300 Sobic003G381200 Sobic003G381200 Sobic001G159400--Sobic003G381200 Sobic003G138500 Sobic003G138500 Sobic001G159400--Sobic003G138500 Sobic001G090500 Sobic001G090500 Sobic001G159400--Sobic001G090500 Sobic001G159400--Sobic010G256700 Sobic001G159400--Sobic007G193700 Sobic002G276100 Sobic002G276100 Sobic001G159400--Sobic002G276100 Sobic001G159400--Sobic003G396200 Sobic004G181700 Sobic004G181700 Sobic001G159400--Sobic004G181700 Sobic004G317100 Sobic004G317100 Sobic001G159400--Sobic004G317100 Sobic010G248700--Sobic001G214300 Sobic008G130100 Sobic008G130100 Sobic010G248700--Sobic008G130100 Sobic002G173000 Sobic002G173000 Sobic010G248700--Sobic002G173000 Sobic010G248700--Sobic010G256700 Sobic004G341900 Sobic004G341900 Sobic010G248700--Sobic004G341900 Sobic010G248700--Sobic001G365900 Sobic010G248700--Sobic002G104100 Sobic003G148000 Sobic003G148000 Sobic010G248700--Sobic003G148000 Sobic010G248700--Sobic001G454500 Sobic004G263600 Sobic004G263600 Sobic007G193700--Sobic004G263600 Sobic003G086900 Sobic003G086900 Sobic007G193700--Sobic003G086900 Sobic004G200200 Sobic004G200200 Sobic007G193700--Sobic004G200200 Sobic004G174200 Sobic004G174200 Sobic007G193700--Sobic004G174200 Sobic007G193700--Sobic002G134200 Sobic010G239600 Sobic010G239600 Sobic007G193700--Sobic010G239600 Sobic003G139900 Sobic003G139900 Sobic007G193700--Sobic003G139900 Sobic003G247500 Sobic003G247500 Sobic007G193700--Sobic003G247500 Sobic007G193700--Sobic003G396200 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic006G133900--Sobic001G454500 Sobic003G155100 Sobic003G155100 Sobic006G133900--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic006G133900--Sobic002G104100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic003G388100 Sobic003G388100 Sobic001G454500--Sobic003G388100 Sobic001G454500--Sobic008G130100 Sobic001G454500--Sobic006G133900 Sobic001G454500--Sobic001G375100 Sobic001G454500--Sobic001G365900 Sobic008G001200 Sobic008G001200 Sobic001G454500--Sobic008G001200 Sobic001G454500--Sobic010G010700 Sobic001G454500--Sobic003G155100 Sobic001G454500--Sobic003G247500 Sobic002G104100--Sobic004G181600 Sobic002G104100--Sobic006G133900 Sobic002G104100--Sobic006G065600 Sobic004G164400 Sobic004G164400 Sobic002G104100--Sobic004G164400 Sobic002G104100--Sobic003G370700 Sobic001G169900 Sobic001G169900 Sobic002G104100--Sobic001G169900 Sobic002G104100--Sobic010G248700 Sobic002G104100--Sobic001G365900 Sobic002G104100--Sobic006G182900
Octagon: transcription factors


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