Gene annotation
Transcriptome id Sobic.002G118200.1
Synonym Sb02g010070
Functional annotation tetratricopeptide repeat domain containing protein, putative, expressed
UniProt C5X4F6
Pfam PF15044 PF12807 PF13424
Panther DB PTHR12601 PTHR12601:SF17
NCBI CDD -
KEGG Orthology K03255; TIF31, protein TIF31
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01320 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g23990.1 : tetratricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045751
Brachypodium KQK16527
Barley HORVU3Hr1G073630.30 , HORVU3Hr1G073630.31 , HORVU3Hr1G073630.32 , HORVU3Hr1G073630.33 , HORVU3Hr1G073630.34 , HORVU3Hr1G073630.35 , HORVU3Hr1G073630.36 , HORVU3Hr1G073630.37 , HORVU3Hr1G073630.38 , HORVU3Hr1G073630.39 , HORVU3Hr1G073630.16 , HORVU3Hr1G073670.16 , HORVU3Hr1G073670.17 , HORVU3Hr1G073670.14 , HORVU3Hr1G073670.15 , HORVU3Hr1G073670.12 , HORVU3Hr1G073670.10 , HORVU3Hr1G073670.11 , HORVU3Hr1G073670.18 , HORVU3Hr1G073670.19 , HORVU3Hr1G073630.27 , HORVU3Hr1G073630.26 , HORVU3Hr1G073630.41 , HORVU3Hr1G073630.40 , HORVU3Hr1G073630.42 , HORVU3Hr1G073630.29 , HORVU3Hr1G073670.29 , HORVU3Hr1G073670.28 , HORVU3Hr1G073670.27 , HORVU3Hr1G073670.26 , HORVU3Hr1G073670.25 , HORVU3Hr1G073670.24 , HORVU3Hr1G073670.23 , HORVU3Hr1G073670.22 , HORVU3Hr1G073670.21 , HORVU3Hr1G073670.20 , HORVU3Hr1G073630.18 , HORVU3Hr1G073630.19 , HORVU3Hr1G073630.12 , HORVU3Hr1G073630.13 , HORVU3Hr1G073630.10 , HORVU3Hr1G073630.11 , HORVU3Hr1G073630.17 , HORVU3Hr1G073630.14 , HORVU3Hr1G073630.15 , HORVU3Hr1G073670.3 , HORVU3Hr1G073670.34 , HORVU3Hr1G073670.35 , HORVU3Hr1G073670.36 , HORVU3Hr1G073670.37 , HORVU3Hr1G073670.30 , HORVU3Hr1G073670.31 , HORVU3Hr1G073670.32 , HORVU3Hr1G073670.33 , HORVU3Hr1G073630.23 , HORVU3Hr1G073630.22 , HORVU3Hr1G073630.21 , HORVU3Hr1G073630.20 , HORVU3Hr1G073630.24 , HORVU3Hr1G073630.28 , HORVU3Hr1G073630.1 , HORVU3Hr1G073630.2 , HORVU3Hr1G073630.3 , HORVU3Hr1G073630.4 , HORVU3Hr1G073630.5 , HORVU3Hr1G073630.6 , HORVU3Hr1G073630.7 , HORVU3Hr1G073630.8 , HORVU3Hr1G073630.9 , HORVU3Hr1G073670.4 , HORVU3Hr1G073670.5 , HORVU3Hr1G073670.6 , HORVU3Hr1G073670.7 , HORVU3Hr1G073670.1 , HORVU3Hr1G073670.2 , HORVU3Hr1G073670.8 , HORVU3Hr1G073670.9 , HORVU3Hr1G073670.13
Wheat TraesCS3A02G303900 , TraesCS3B02G332300 , TraesCS3D02G297900 , TraesCS3D02G297800 , TraesCS3B02G332400 , TraesCS3A02G304100
Populus PNT43379 , PNT43378 , PNT43380 , PNT32283 , PNS93706


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
2 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
3 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
4 Sobic.003G085100 MYB family transcription factor, putative, expressed -
5 Sobic.002G258600 expressed protein -
6 Sobic.009G123900 L1P family of ribosomal proteins domain containing protein, expressed K02863: RP-L1, MRPL1, large subunit ribosomal protein L1
7 Sobic.004G019800 MATE domain containing protein, expressed -
8 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
9 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
10 Sobic.003G146500 red chlorophyll catabolite reductase, putative, expressed K13545: RCCR, red chlorophyll catabolite reductase
11 Sobic.003G233700 SET domain-containing protein, putative, expressed -
12 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
13 Sobic.001G530900 expressed protein -
14 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
15 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
16 Sobic.005G118400 expressed protein -
17 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
18 Sobic.001G516901 - -
19 Sobic.002G231200 Rf1, mitochondrial precursor, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
20 Sobic.005G111550 - -


Gene co-expression network
sample Sobic002G118200 Sobic002G118200 Sobic007G005400 Sobic007G005400 Sobic002G118200--Sobic007G005400 Sobic005G084500 Sobic005G084500 Sobic002G118200--Sobic005G084500 Sobic001G531500 Sobic001G531500 Sobic002G118200--Sobic001G531500 Sobic003G085100 Sobic003G085100 Sobic002G118200--Sobic003G085100 Sobic002G258600 Sobic002G258600 Sobic002G118200--Sobic002G258600 Sobic009G123900 Sobic009G123900 Sobic002G118200--Sobic009G123900 Sobic004G019800 Sobic004G019800 Sobic002G118200--Sobic004G019800 Sobic009G093100 Sobic009G093100 Sobic002G118200--Sobic009G093100 Sobic008G074000 Sobic008G074000 Sobic002G118200--Sobic008G074000 Sobic007G005400--Sobic003G085100 Sobic007G005400--Sobic002G118200 Sobic007G005400--Sobic005G084500 Sobic004G238200 Sobic004G238200 Sobic007G005400--Sobic004G238200 Sobic003G150800 Sobic003G150800 Sobic007G005400--Sobic003G150800 Sobic003G287900 Sobic003G287900 Sobic007G005400--Sobic003G287900 Sobic005G231100 Sobic005G231100 Sobic007G005400--Sobic005G231100 Sobic004G337400 Sobic004G337400 Sobic007G005400--Sobic004G337400 Sobic007G185700 Sobic007G185700 Sobic007G005400--Sobic007G185700 Sobic005G084500--Sobic007G005400 Sobic005G084500--Sobic002G118200 Sobic005G084500--Sobic004G238200 Sobic005G084500--Sobic004G337400 Sobic006G219600 Sobic006G219600 Sobic005G084500--Sobic006G219600 Sobic005G084500--Sobic004G019800 Sobic004G163800 Sobic004G163800 Sobic005G084500--Sobic004G163800 Sobic001G530900 Sobic001G530900 Sobic005G084500--Sobic001G530900 Sobic001G516901 Sobic001G516901 Sobic005G084500--Sobic001G516901 Sobic001G531500--Sobic002G118200 Sobic006G064100 Sobic006G064100 Sobic001G531500--Sobic006G064100 Sobic002G403600 Sobic002G403600 Sobic001G531500--Sobic002G403600 Sobic001G073900 Sobic001G073900 Sobic001G531500--Sobic001G073900 Sobic010G205100 Sobic010G205100 Sobic001G531500--Sobic010G205100 Sobic001G531500--Sobic009G123900 Sobic005G001700 Sobic005G001700 Sobic001G531500--Sobic005G001700 Sobic008G001900 Sobic008G001900 Sobic001G531500--Sobic008G001900 Sobic003G332700 Sobic003G332700 Sobic001G531500--Sobic003G332700 Sobic003G085100--Sobic003G150800 Sobic003G085100--Sobic007G005400 Sobic005G111550 Sobic005G111550 Sobic003G085100--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic003G085100--Sobic003G160800 Sobic005G063000 Sobic005G063000 Sobic003G085100--Sobic005G063000 Sobic003G233700 Sobic003G233700 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G085100--Sobic003G287900 Sobic003G085100--Sobic008G001900 Sobic002G258600--Sobic008G074000 Sobic001G183000 Sobic001G183000 Sobic002G258600--Sobic001G183000 Sobic002G258600--Sobic004G019800 Sobic009G024300 Sobic009G024300 Sobic002G258600--Sobic009G024300 Sobic009G237000 Sobic009G237000 Sobic002G258600--Sobic009G237000 Sobic002G258600--Sobic002G118200 Sobic002G258600--Sobic001G516901 Sobic007G162600 Sobic007G162600 Sobic002G258600--Sobic007G162600 Sobic002G258600--Sobic003G287900 Sobic009G123900--Sobic002G118200 Sobic005G068700 Sobic005G068700 Sobic009G123900--Sobic005G068700 Sobic002G056500 Sobic002G056500 Sobic009G123900--Sobic002G056500 Sobic003G036200 Sobic003G036200 Sobic009G123900--Sobic003G036200 Sobic009G123900--Sobic001G531500 Sobic009G123900--Sobic004G019800 Sobic002G402700 Sobic002G402700 Sobic009G123900--Sobic002G402700 Sobic009G123900--Sobic007G005400 Sobic004G268300 Sobic004G268300 Sobic009G123900--Sobic004G268300 Sobic004G019800--Sobic009G093100 Sobic001G378100 Sobic001G378100 Sobic004G019800--Sobic001G378100 Sobic001G536700 Sobic001G536700 Sobic004G019800--Sobic001G536700 Sobic009G170200 Sobic009G170200 Sobic004G019800--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic004G019800--Sobic001G504400 Sobic004G019800--Sobic009G237000 Sobic001G359300 Sobic001G359300 Sobic004G019800--Sobic001G359300 Sobic004G019800--Sobic002G258600 Sobic004G019800--Sobic003G233700 Sobic001G077300 Sobic001G077300 Sobic009G093100--Sobic001G077300 Sobic009G093100--Sobic001G359300 Sobic009G093100--Sobic004G019800 Sobic006G065100 Sobic006G065100 Sobic009G093100--Sobic006G065100 Sobic009G093100--Sobic001G536700 Sobic009G073900 Sobic009G073900 Sobic009G093100--Sobic009G073900 Sobic009G093100--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic009G093100--Sobic002G206300 Sobic001G333800 Sobic001G333800 Sobic009G093100--Sobic001G333800 Sobic003G070900 Sobic003G070900 Sobic008G074000--Sobic003G070900 Sobic007G103400 Sobic007G103400 Sobic008G074000--Sobic007G103400 Sobic002G133900 Sobic002G133900 Sobic008G074000--Sobic002G133900 Sobic008G074000--Sobic003G233700 Sobic008G074000--Sobic009G237000 Sobic008G074000--Sobic001G504400 Sobic004G353100 Sobic004G353100 Sobic008G074000--Sobic004G353100 Sobic008G074000--Sobic009G170200 Sobic009G219100 Sobic009G219100 Sobic008G074000--Sobic009G219100
Octagon: transcription factors


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