Gene annotation
| Transcriptome id | Sobic.005G084500.1 |
|---|---|
| Synonym | Sb05g006893 |
| Functional annotation | uncharacterized protein yqxC, putative, expressed |
| UniProt | A0A1B6PQZ8 |
| Pfam | PF01479 PF01728 |
| Panther DB | PTHR32319 PTHR32319:SF0 |
| NCBI CDD | - |
| KEGG Orthology | K06442; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase |
| Gene Ontology | GO:0003723; RNA binding GO:0008168methyltransferase activity |
Orthologs (automatic annotation)
| TAIR | AT3G25470 : bacterial hemolysin-related |
|---|---|
| RAP-DB (Rice) | LOC_Os11g14230.1 : uncharacterized protein yqxC, putative, expressed |
| MaizeGDB (Corn) | Zm00025a029564 |
| Brachypodium | KQJ88749 |
| Barley | HORVU4Hr1G014850.8 , HORVU4Hr1G014850.1 , HORVU4Hr1G014850.2 , HORVU4Hr1G014850.3 , HORVU4Hr1G014850.4 , HORVU4Hr1G014850.5 , HORVU4Hr1G014850.6 , HORVU4Hr1G014850.28 , HORVU4Hr1G014850.23 , HORVU4Hr1G014850.22 , HORVU4Hr1G014850.20 , HORVU4Hr1G014850.27 , HORVU4Hr1G014850.26 , HORVU4Hr1G014850.25 , HORVU4Hr1G014850.24 , HORVU4Hr1G014850.12 , HORVU4Hr1G014850.13 , HORVU4Hr1G014850.11 , HORVU4Hr1G014850.16 , HORVU4Hr1G014850.17 , HORVU4Hr1G014850.14 , HORVU4Hr1G014850.15 , HORVU4Hr1G014850.18 , HORVU4Hr1G014850.19 |
| Wheat | TraesCS4D02G084400 , TraesCS4D02G084400 , TraesCS4D02G084400 , TraesCS4B02G087200 , TraesCS4B02G087200 , TraesCS4A02G229200 , TraesCS4A02G229200 |
| Populus | - |
JBrowse
| Sobic.005G084500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G005400 | chaperone protein dnaJ, putative, expressed | K03686: molecular chaperone DnaJ |
| 2 | Sobic.002G118200 | tetratricopeptide repeat domain containing protein, putative, expressed | K03255: TIF31, protein TIF31 |
| 3 | Sobic.004G238200 | arsenical pump-driving ATPase, putative, expressed | K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase |
| 4 | Sobic.004G337400 | ELMO/CED-12 family protein, putative, expressed | - |
| 5 | Sobic.006G219600 | SIT4 phosphatase-associated protein domain containing protein, expressed | K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3 |
| 6 | Sobic.004G019800 | MATE domain containing protein, expressed | - |
| 7 | Sobic.004G163800 | neutral/alkaline invertase, putative, expressed | - |
| 8 | Sobic.001G530900 | expressed protein | - |
| 9 | Sobic.001G516901 | - | - |
| 10 | Sobic.003G077700 | DUF647 domain containing protein, putative, expressed | - |
| 11 | Sobic.009G093100 | OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed | - |
| 12 | Sobic.002G043600 | prolyl-tRNA synthetase, putative, expressed | K01881: PARS, prolyl-tRNA synthetase |
| 13 | Sobic.004G356700 | oligopeptidase, putative, expressed | K01414: oligopeptidase A |
| 14 | Sobic.001G378100 | relA-SpoT like protein RSH1, putative, expressed | - |
| 15 | Sobic.006G232600 | amine oxidase, flavin-containing, domain containing protein, expressed | K02293: PDS, 15-cis-phytoene desaturase |
| 16 | Sobic.006G233700 | PolI-like DNA polymerase, putative, expressed | K02335: DNA polymerase I |
| 17 | Sobic.003G217700 | - | - |
| 18 | Sobic.001G219700 | pentatricopeptide, putative, expressed | - |
| 19 | Sobic.007G166200 | PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 20 | Sobic.007G185700 | CRS2-associated factor 1, chloroplast precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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