Gene annotation
Transcriptome id Sobic.007G185700.1,Sobic.007G185700.2,Sobic.007G185700.3
Synonym ATCAF1, CAF1, Sb07g025550
Functional annotation CRS2-associated factor 1, chloroplast precursor, putative, expressed
UniProt A0A1Z5RAK4 , C5YHJ5
Pfam PF01985
Panther DB PTHR31846 PTHR31846:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G20020 : RNA-binding CRS1 / YhbY (CRM) domain-containing protein
RAP-DB (Rice) LOC_Os01g31110.1 : CRS2-associated factor 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045844
Brachypodium KQK04461
Barley HORVU3Hr1G041900.3 , HORVU3Hr1G041900.2 , HORVU3Hr1G041900.1 , HORVU3Hr1G041900.5 , HORVU3Hr1G041900.4
Wheat TraesCS3D02G200400 , TraesCS3B02G222400 , TraesCS3A02G196400
Populus -


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cDNA sequences
Sobic.007G185700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
2 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
3 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
4 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
5 Sobic.003G217700 - -
6 Sobic.001G530900 expressed protein -
7 Sobic.003G352500 ribonuclease protein, putative, expressed -
8 Sobic.001G261573 - -
9 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein
10 Sobic.003G085100 MYB family transcription factor, putative, expressed -
11 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
12 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
13 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
14 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
15 Sobic.009G121000 expressed protein -
16 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
17 Sobic.010G176550 - -
18 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
19 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
20 Sobic.001G516901 - -


Gene co-expression network
sample Sobic007G185700 Sobic007G185700 Sobic001G054100 Sobic001G054100 Sobic007G185700--Sobic001G054100 Sobic003G234900 Sobic003G234900 Sobic007G185700--Sobic003G234900 Sobic003G141100 Sobic003G141100 Sobic007G185700--Sobic003G141100 Sobic001G500600 Sobic001G500600 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic001G530900 Sobic001G530900 Sobic007G185700--Sobic001G530900 Sobic003G352500 Sobic003G352500 Sobic007G185700--Sobic003G352500 Sobic001G261573 Sobic001G261573 Sobic007G185700--Sobic001G261573 Sobic005G231100 Sobic005G231100 Sobic007G185700--Sobic005G231100 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic003G372900 Sobic003G372900 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic002G181000 Sobic002G181000 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic004G163800 Sobic004G163800 Sobic003G234900--Sobic004G163800 Sobic003G234900--Sobic007G185700 Sobic003G067100 Sobic003G067100 Sobic003G234900--Sobic003G067100 Sobic003G234900--Sobic005G231100 Sobic002G431300 Sobic002G431300 Sobic003G234900--Sobic002G431300 Sobic002G043600 Sobic002G043600 Sobic003G234900--Sobic002G043600 Sobic003G234900--Sobic003G141100 Sobic002G343400 Sobic002G343400 Sobic003G234900--Sobic002G343400 Sobic006G038500 Sobic006G038500 Sobic003G234900--Sobic006G038500 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic004G336200 Sobic004G336200 Sobic003G141100--Sobic004G336200 Sobic003G232700 Sobic003G232700 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic009G148500 Sobic009G148500 Sobic003G141100--Sobic009G148500 Sobic003G160800 Sobic003G160800 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic001G500600--Sobic003G141100 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic001G500600--Sobic003G372900 Sobic003G217700--Sobic007G185700 Sobic010G176550 Sobic010G176550 Sobic003G217700--Sobic010G176550 Sobic007G023200 Sobic007G023200 Sobic003G217700--Sobic007G023200 Sobic003G217700--Sobic001G530900 Sobic005G084500 Sobic005G084500 Sobic003G217700--Sobic005G084500 Sobic004G042200 Sobic004G042200 Sobic003G217700--Sobic004G042200 Sobic008G001900 Sobic008G001900 Sobic003G217700--Sobic008G001900 Sobic001G198100 Sobic001G198100 Sobic003G217700--Sobic001G198100 Sobic004G238200 Sobic004G238200 Sobic003G217700--Sobic004G238200 Sobic010G002700 Sobic010G002700 Sobic001G530900--Sobic010G002700 Sobic009G215500 Sobic009G215500 Sobic001G530900--Sobic009G215500 Sobic001G378100 Sobic001G378100 Sobic001G530900--Sobic001G378100 Sobic001G530900--Sobic007G185700 Sobic005G118400 Sobic005G118400 Sobic001G530900--Sobic005G118400 Sobic001G530900--Sobic005G084500 Sobic003G332700 Sobic003G332700 Sobic001G530900--Sobic003G332700 Sobic001G465700 Sobic001G465700 Sobic001G530900--Sobic001G465700 Sobic001G530900--Sobic003G217700 Sobic003G352500--Sobic003G232700 Sobic003G352500--Sobic002G043600 Sobic003G352500--Sobic002G181000 Sobic003G352500--Sobic007G185700 Sobic003G352500--Sobic003G141100 Sobic003G352500--Sobic001G054100 Sobic006G270200 Sobic006G270200 Sobic003G352500--Sobic006G270200 Sobic003G352500--Sobic001G028100 Sobic003G352500--Sobic001G500600 Sobic003G254000 Sobic003G254000 Sobic001G261573--Sobic003G254000 Sobic001G261573--Sobic007G185700 Sobic001G261573--Sobic010G176550 Sobic002G231200 Sobic002G231200 Sobic001G261573--Sobic002G231200 Sobic005G039500 Sobic005G039500 Sobic001G261573--Sobic005G039500 Sobic006G058100 Sobic006G058100 Sobic001G261573--Sobic006G058100 Sobic001G261573--Sobic003G234900 Sobic003G161000 Sobic003G161000 Sobic001G261573--Sobic003G161000 Sobic009G209300 Sobic009G209300 Sobic001G261573--Sobic009G209300 Sobic005G231100--Sobic001G500600 Sobic003G085100 Sobic003G085100 Sobic005G231100--Sobic003G085100 Sobic005G231100--Sobic009G148500 Sobic001G516901 Sobic001G516901 Sobic005G231100--Sobic001G516901 Sobic005G231100--Sobic003G232700 Sobic005G231100--Sobic004G238200 Sobic007G005400 Sobic007G005400 Sobic005G231100--Sobic007G005400 Sobic005G231100--Sobic002G043600 Sobic005G231100--Sobic003G234900
Octagon: transcription factors


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