Gene annotation
Transcriptome id Sobic.003G141100.2,Sobic.003G141100.1
Synonym GCP1, Sb03g012030
Functional annotation O-sialoglycoprotein endopeptidase, putative, expressed
UniProt A0A1W0VXB0 , A0A1W0VXB8
Pfam PF00814
Panther DB PTHR11735 PTHR11735:SF12
NCBI CDD KOG2707; Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold)
KEGG Orthology K01409; KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45270 : glycoprotease 1
RAP-DB (Rice) LOC_Os12g29990.2,LOC_Os12g29990.1 : O-sialoglycoprotein endopeptidase, putative, expressed
MaizeGDB (Corn) Zm00025a024249
Brachypodium PNT70401 , PNT70400 , KQK04054 , KQK04053 , KQK04050 , KQK04051 , KQK04048 , KQK04047
Barley HORVU3Hr1G029020.2 , HORVU3Hr1G029020.3 , HORVU3Hr1G029020.1 , HORVU3Hr1G029020.6 , HORVU3Hr1G029020.7 , HORVU3Hr1G029020.4 , HORVU3Hr1G029020.5
Wheat TraesCS5B02G083500 , TraesCS5D02G090000 , TraesCS5D02G090000 , TraesCS5A02G076800 , TraesCS3D02G149500 , TraesCS3D02G149500 , TraesCS5A02G076800 , TraesCS3B02G166200 , TraesCS3B02G166200 , TraesCS5B02G082600 , TraesCS5B02G082600 , TraesCS3A02G133300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G141100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
2 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
3 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
5 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
6 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
7 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
8 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
10 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
11 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
12 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
13 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
14 Sobic.004G333400 COBW domain containing protein, putative, expressed -
15 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
16 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
17 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
18 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
19 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
20 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase


Gene co-expression network
sample Sobic003G141100 Sobic003G141100 Sobic001G500600 Sobic001G500600 Sobic003G141100--Sobic001G500600 Sobic004G328400 Sobic004G328400 Sobic003G141100--Sobic004G328400 Sobic004G336200 Sobic004G336200 Sobic003G141100--Sobic004G336200 Sobic003G232700 Sobic003G232700 Sobic003G141100--Sobic003G232700 Sobic003G372900 Sobic003G372900 Sobic003G141100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic003G141100--Sobic001G054100 Sobic009G148500 Sobic009G148500 Sobic003G141100--Sobic009G148500 Sobic003G160800 Sobic003G160800 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic001G500600--Sobic003G141100 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic001G500600--Sobic003G372900 Sobic004G328400--Sobic003G141100 Sobic004G328400--Sobic003G232700 Sobic004G328400--Sobic003G372900 Sobic004G328400--Sobic001G500600 Sobic004G328400--Sobic004G336200 Sobic004G328400--Sobic001G054100 Sobic003G301300 Sobic003G301300 Sobic004G328400--Sobic003G301300 Sobic003G150800 Sobic003G150800 Sobic004G328400--Sobic003G150800 Sobic004G328400--Sobic003G160800 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic008G073100 Sobic008G073100 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic005G110400 Sobic005G110400 Sobic004G336200--Sobic005G110400 Sobic004G336200--Sobic006G197300 Sobic003G232700--Sobic001G500600 Sobic003G232700--Sobic006G197300 Sobic002G181000 Sobic002G181000 Sobic003G232700--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic003G232700--Sobic002G043600 Sobic001G495200 Sobic001G495200 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G352500 Sobic003G352500 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G232700--Sobic003G301300 Sobic003G372900--Sobic001G500600 Sobic003G372900--Sobic001G054100 Sobic001G083100 Sobic001G083100 Sobic003G372900--Sobic001G083100 Sobic002G406700 Sobic002G406700 Sobic003G372900--Sobic002G406700 Sobic003G372900--Sobic003G141100 Sobic003G372900--Sobic003G094350 Sobic003G372900--Sobic004G336200 Sobic004G333400 Sobic004G333400 Sobic003G372900--Sobic004G333400 Sobic006G280800 Sobic006G280800 Sobic003G372900--Sobic006G280800 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic001G054100--Sobic004G328400 Sobic009G148500--Sobic001G083100 Sobic003G151500 Sobic003G151500 Sobic009G148500--Sobic003G151500 Sobic009G148500--Sobic008G073100 Sobic006G055800 Sobic006G055800 Sobic009G148500--Sobic006G055800 Sobic001G126300 Sobic001G126300 Sobic009G148500--Sobic001G126300 Sobic004G011300 Sobic004G011300 Sobic009G148500--Sobic004G011300 Sobic009G148500--Sobic005G002900 Sobic009G148500--Sobic005G110400 Sobic009G148500--Sobic001G500600 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic005G002900--Sobic001G083100 Sobic005G002900--Sobic006G055800 Sobic005G002900--Sobic009G148500 Sobic001G469933 Sobic001G469933 Sobic005G002900--Sobic001G469933 Sobic001G291900 Sobic001G291900 Sobic005G002900--Sobic001G291900 Sobic006G106400 Sobic006G106400 Sobic005G002900--Sobic006G106400 Sobic003G432500 Sobic003G432500 Sobic005G002900--Sobic003G432500 Sobic005G002900--Sobic003G232700 Sobic002G131700 Sobic002G131700 Sobic005G002900--Sobic002G131700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.