Gene annotation
Transcriptome id Sobic.003G160800.3,Sobic.003G160800.2,Sobic.003G160800.1
Synonym Sb03g014370, LPA1
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1B6Q3N7 , A0A1W0VXI5
Pfam PF11998 PF13414 PF11998
Panther DB PTHR17130 PTHR17130:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02910 : tetratricopeptide repeat (TPR)-containing protein
RAP-DB (Rice) LOC_Os01g25600.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a024513
Brachypodium KQK04279
Barley HORVU3Hr1G021910.10 , HORVU3Hr1G021910.11 , HORVU3Hr1G021910.12 , HORVU3Hr1G021910.13 , HORVU3Hr1G021910.14 , HORVU3Hr1G021910.15 , HORVU3Hr1G021910.16 , HORVU3Hr1G021910.17 , HORVU3Hr1G021910.2 , HORVU3Hr1G021910.3 , HORVU3Hr1G021910.1 , HORVU3Hr1G021910.6 , HORVU3Hr1G021910.7 , HORVU3Hr1G021910.4 , HORVU3Hr1G021910.5 , HORVU3Hr1G021910.8 , HORVU3Hr1G021910.9
Wheat TraesCS3A02G118600 , TraesCS3A02G118600 , TraesCS3B02G137700 , TraesCS3B02G137700 , TraesCS3D02G120500 , TraesCS3D02G120500 , TraesCS3D02G120500
Populus -


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cDNA sequences
Sobic.003G160800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
2 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
3 Sobic.010G035400 expressed protein -
4 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
5 Sobic.007G103400 expressed protein -
6 Sobic.002G112400 PGR5-LIKE A(PubMedID : 26465154)@expressed protein -
7 Sobic.003G233700 SET domain-containing protein, putative, expressed -
8 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
9 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
10 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
11 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
12 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
13 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
14 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
15 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
16 Sobic.008G006100 MATE efflux protein, putative, expressed -
17 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
18 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
19 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.001G128600 -(PubMedID : 26465154)@DUF1517 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G160800 Sobic003G160800 Sobic004G336200 Sobic004G336200 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic010G035400 Sobic010G035400 Sobic003G160800--Sobic010G035400 Sobic003G387100 Sobic003G387100 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic001G134700 Sobic001G134700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic004G336200--Sobic010G035400 Sobic001G500600 Sobic001G500600 Sobic004G336200--Sobic001G500600 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic008G073100 Sobic008G073100 Sobic004G336200--Sobic008G073100 Sobic004G336200--Sobic001G134700 Sobic005G110400 Sobic005G110400 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic002G405100 Sobic002G405100 Sobic005G100300--Sobic002G405100 Sobic002G133900 Sobic002G133900 Sobic005G100300--Sobic002G133900 Sobic010G201600 Sobic010G201600 Sobic005G100300--Sobic010G201600 Sobic003G094350 Sobic003G094350 Sobic005G100300--Sobic003G094350 Sobic005G100300--Sobic003G160800 Sobic001G128600 Sobic001G128600 Sobic005G100300--Sobic001G128600 Sobic005G100300--Sobic002G401800 Sobic005G100300--Sobic001G134700 Sobic004G353100 Sobic004G353100 Sobic005G100300--Sobic004G353100 Sobic010G035400--Sobic007G103400 Sobic007G225500 Sobic007G225500 Sobic010G035400--Sobic007G225500 Sobic010G035400--Sobic004G336200 Sobic010G035400--Sobic004G353100 Sobic009G237000 Sobic009G237000 Sobic010G035400--Sobic009G237000 Sobic002G275300 Sobic002G275300 Sobic010G035400--Sobic002G275300 Sobic010G035400--Sobic003G160800 Sobic006G207800 Sobic006G207800 Sobic010G035400--Sobic006G207800 Sobic010G035400--Sobic003G387100 Sobic009G059300 Sobic009G059300 Sobic003G387100--Sobic009G059300 Sobic003G387100--Sobic004G336200 Sobic003G387100--Sobic008G073100 Sobic003G387100--Sobic006G207800 Sobic003G387100--Sobic003G160800 Sobic003G387100--Sobic005G110400 Sobic004G012900 Sobic004G012900 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic003G387100--Sobic010G035400 Sobic007G103400--Sobic009G237000 Sobic002G298800 Sobic002G298800 Sobic007G103400--Sobic002G298800 Sobic007G103400--Sobic004G353100 Sobic007G103400--Sobic010G035400 Sobic001G504400 Sobic001G504400 Sobic007G103400--Sobic001G504400 Sobic003G306200 Sobic003G306200 Sobic007G103400--Sobic003G306200 Sobic002G198300 Sobic002G198300 Sobic007G103400--Sobic002G198300 Sobic007G103400--Sobic003G233700 Sobic007G103400--Sobic002G275300 Sobic002G112400--Sobic001G128600 Sobic008G006100 Sobic008G006100 Sobic002G112400--Sobic008G006100 Sobic002G112400--Sobic003G160800 Sobic009G062400 Sobic009G062400 Sobic002G112400--Sobic009G062400 Sobic006G265900 Sobic006G265900 Sobic002G112400--Sobic006G265900 Sobic001G122300 Sobic001G122300 Sobic002G112400--Sobic001G122300 Sobic009G056700 Sobic009G056700 Sobic002G112400--Sobic009G056700 Sobic002G112400--Sobic009G237000 Sobic002G112400--Sobic003G387100 Sobic003G233700--Sobic007G103400 Sobic003G287900 Sobic003G287900 Sobic003G233700--Sobic003G287900 Sobic003G233700--Sobic004G353100 Sobic003G233700--Sobic002G133900 Sobic003G233700--Sobic009G237000 Sobic003G233700--Sobic003G160800 Sobic008G074000 Sobic008G074000 Sobic003G233700--Sobic008G074000 Sobic003G233700--Sobic003G094350 Sobic003G233700--Sobic001G500600 Sobic001G134700--Sobic004G336200 Sobic001G134700--Sobic005G100300 Sobic001G134700--Sobic003G160800 Sobic001G134700--Sobic008G006100 Sobic006G101500 Sobic006G101500 Sobic001G134700--Sobic006G101500 Sobic001G134700--Sobic001G500600 Sobic001G134700--Sobic008G073100 Sobic001G134700--Sobic005G110400 Sobic001G134700--Sobic003G387100 Sobic001G005200 Sobic001G005200 Sobic009G175500--Sobic001G005200 Sobic009G175500--Sobic004G336200 Sobic009G175500--Sobic001G128600 Sobic009G175500--Sobic003G160800 Sobic009G175500--Sobic003G387100 Sobic009G175500--Sobic001G500600 Sobic001G283700 Sobic001G283700 Sobic009G175500--Sobic001G283700 Sobic001G126300 Sobic001G126300 Sobic009G175500--Sobic001G126300 Sobic009G175500--Sobic010G035400
Octagon: transcription factors


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