Gene annotation
Transcriptome id Sobic.005G110400.2,Sobic.005G110400.1
Synonym Sb05g012100
Functional annotation pentatricopeptide repeat protein PPR986-12, putative, expressed
UniProt A0A1B6PRN8 , A0A1B6PRN1
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF779
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27610 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os11g29230.1 : pentatricopeptide repeat protein PPR986-12, putative, expressed
MaizeGDB (Corn) Zm00025a029748
Brachypodium KQK14961
Barley HORVU3Hr1G005560.1 , HORVU3Hr1G005560.3 , HORVU3Hr1G005560.2 , HORVU3Hr1G005560.5 , HORVU3Hr1G005560.4 , HORVU3Hr1G005560.7 , HORVU3Hr1G005560.6 , HORVU3Hr1G005560.9 , HORVU3Hr1G005560.8 , HORVU3Hr1G005560.20 , HORVU3Hr1G005560.21 , HORVU3Hr1G005560.22 , HORVU3Hr1G005560.23 , HORVU3Hr1G005560.24 , HORVU3Hr1G005560.25 , HORVU3Hr1G005560.26 , HORVU3Hr1G005560.27 , HORVU3Hr1G005560.28 , HORVU3Hr1G005560.15 , HORVU3Hr1G005560.14 , HORVU3Hr1G005560.17 , HORVU3Hr1G005560.16 , HORVU3Hr1G005560.11 , HORVU3Hr1G005560.10 , HORVU3Hr1G005560.13 , HORVU3Hr1G005560.12 , HORVU3Hr1G005560.19 , HORVU3Hr1G005560.18
Wheat TraesCS3A02G027700 , TraesCS3A02G027700 , TraesCS3A02G027700 , TraesCS3A02G027700 , TraesCS3D02G018200 , TraesCS3B02G017800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
2 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
3 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
4 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
5 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
7 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
8 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
9 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
10 Sobic.001G309300 expressed protein -
11 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
12 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
13 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
15 Sobic.002G272100 expressed protein -
16 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
17 Sobic.003G324700 expressed protein -
18 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
19 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -


Gene co-expression network
sample Sobic005G110400 Sobic005G110400 Sobic008G073100 Sobic008G073100 Sobic005G110400--Sobic008G073100 Sobic001G368500 Sobic001G368500 Sobic005G110400--Sobic001G368500 Sobic001G126300 Sobic001G126300 Sobic005G110400--Sobic001G126300 Sobic002G401800 Sobic002G401800 Sobic005G110400--Sobic002G401800 Sobic004G336200 Sobic004G336200 Sobic005G110400--Sobic004G336200 Sobic003G387100 Sobic003G387100 Sobic005G110400--Sobic003G387100 Sobic005G143500 Sobic005G143500 Sobic005G110400--Sobic005G143500 Sobic003G077400 Sobic003G077400 Sobic005G110400--Sobic003G077400 Sobic003G432500 Sobic003G432500 Sobic005G110400--Sobic003G432500 Sobic008G073100--Sobic005G110400 Sobic008G073100--Sobic001G368500 Sobic008G073100--Sobic002G401800 Sobic008G073100--Sobic003G387100 Sobic008G073100--Sobic004G336200 Sobic001G309300 Sobic001G309300 Sobic008G073100--Sobic001G309300 Sobic008G073100--Sobic003G077400 Sobic002G272100 Sobic002G272100 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400 Sobic003G324700 Sobic003G324700 Sobic001G368500--Sobic003G324700 Sobic001G368500--Sobic005G110400 Sobic001G368500--Sobic003G432500 Sobic001G469933 Sobic001G469933 Sobic001G368500--Sobic001G469933 Sobic001G122400 Sobic001G122400 Sobic001G368500--Sobic001G122400 Sobic001G368500--Sobic008G073100 Sobic001G368500--Sobic002G401800 Sobic003G271900 Sobic003G271900 Sobic001G368500--Sobic003G271900 Sobic001G368500--Sobic005G143500 Sobic001G126300--Sobic005G110400 Sobic001G126300--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic001G126300--Sobic001G495200 Sobic003G160800 Sobic003G160800 Sobic001G126300--Sobic003G160800 Sobic009G148500 Sobic009G148500 Sobic001G126300--Sobic009G148500 Sobic001G126300--Sobic003G387100 Sobic009G175500 Sobic009G175500 Sobic001G126300--Sobic009G175500 Sobic001G126300--Sobic004G336200 Sobic003G301300 Sobic003G301300 Sobic001G126300--Sobic003G301300 Sobic002G401800--Sobic004G336200 Sobic002G401800--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G401800--Sobic002G405100 Sobic004G012900 Sobic004G012900 Sobic002G401800--Sobic004G012900 Sobic002G401800--Sobic002G272100 Sobic002G401800--Sobic005G110400 Sobic005G100300 Sobic005G100300 Sobic002G401800--Sobic005G100300 Sobic002G401800--Sobic001G368500 Sobic002G401800--Sobic003G077400 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic001G500600 Sobic001G500600 Sobic004G336200--Sobic001G500600 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic009G059300 Sobic009G059300 Sobic003G387100--Sobic009G059300 Sobic003G387100--Sobic004G336200 Sobic003G387100--Sobic008G073100 Sobic006G207800 Sobic006G207800 Sobic003G387100--Sobic006G207800 Sobic003G387100--Sobic003G160800 Sobic003G387100--Sobic005G110400 Sobic003G387100--Sobic004G012900 Sobic003G412900 Sobic003G412900 Sobic003G387100--Sobic003G412900 Sobic003G387100--Sobic010G035400 Sobic005G143500--Sobic005G110400 Sobic008G039600 Sobic008G039600 Sobic005G143500--Sobic008G039600 Sobic005G143500--Sobic001G368500 Sobic005G143500--Sobic002G401800 Sobic005G143500--Sobic006G106400 Sobic005G143500--Sobic002G272100 Sobic005G143500--Sobic008G073100 Sobic005G143500--Sobic001G495200 Sobic005G143500--Sobic003G324700 Sobic003G077400--Sobic001G469933 Sobic003G077400--Sobic008G073100 Sobic003G077400--Sobic005G110400 Sobic003G077400--Sobic004G012900 Sobic003G077400--Sobic001G368500 Sobic003G077400--Sobic002G401800 Sobic003G077400--Sobic003G387100 Sobic003G077400--Sobic003G160800 Sobic003G077400--Sobic004G336200 Sobic003G432500--Sobic001G368500 Sobic006G055800 Sobic006G055800 Sobic003G432500--Sobic006G055800 Sobic003G432500--Sobic001G469933 Sobic003G432500--Sobic003G271900 Sobic003G432500--Sobic005G110400 Sobic003G432500--Sobic003G324700 Sobic003G432500--Sobic008G073100 Sobic004G336000 Sobic004G336000 Sobic003G432500--Sobic004G336000 Sobic002G152800 Sobic002G152800 Sobic003G432500--Sobic002G152800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.