Gene annotation
Transcriptome id Sobic.003G301300.4,Sobic.003G301300.3,Sobic.003G301300.1,Sobic.003G301300.2
Synonym emb1417, Sb03g035040
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XKR9 , C5XKS3
Pfam PF01535
Panther DB PTHR24015 PTHR24015:SF628
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21190 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os01g55290.2,LOC_Os01g55290.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a040008 , Zm00025a027514
Brachypodium KQK09817 , KQK09816 , KQK09818 , PNT72883 , PNT72882
Barley HORVU5Hr1G009890.3 , HORVU5Hr1G009890.2 , HORVU5Hr1G009890.1 , HORVU5Hr1G009890.7 , HORVU5Hr1G009890.6 , HORVU5Hr1G009890.5 , HORVU5Hr1G009890.4 , HORVU5Hr1G009890.9 , HORVU5Hr1G009890.8 , HORVU5Hr1G009890.13 , HORVU5Hr1G009890.12 , HORVU5Hr1G009890.11 , HORVU5Hr1G009890.10
Wheat TraesCS5D02G048500 , TraesCS5B02G042900 , TraesCS5A02G041600 , TraesCS5A02G041600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
2 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
3 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.010G035400 expressed protein -
5 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
7 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
8 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
9 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
10 Sobic.003G233700 SET domain-containing protein, putative, expressed -
11 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
12 Sobic.006G197300 expressed protein -
13 Sobic.003G085100 MYB family transcription factor, putative, expressed -
14 Sobic.001G516901 - -
15 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
16 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
17 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
18 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
19 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
20 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)


Gene co-expression network
sample Sobic003G301300 Sobic003G301300 Sobic008G073100 Sobic008G073100 Sobic003G301300--Sobic008G073100 Sobic001G500600 Sobic001G500600 Sobic003G301300--Sobic001G500600 Sobic004G336200 Sobic004G336200 Sobic003G301300--Sobic004G336200 Sobic010G035400 Sobic010G035400 Sobic003G301300--Sobic010G035400 Sobic003G160800 Sobic003G160800 Sobic003G301300--Sobic003G160800 Sobic005G110400 Sobic005G110400 Sobic003G301300--Sobic005G110400 Sobic002G406700 Sobic002G406700 Sobic003G301300--Sobic002G406700 Sobic003G232700 Sobic003G232700 Sobic003G301300--Sobic003G232700 Sobic001G126300 Sobic001G126300 Sobic003G301300--Sobic001G126300 Sobic008G073100--Sobic005G110400 Sobic001G368500 Sobic001G368500 Sobic008G073100--Sobic001G368500 Sobic002G401800 Sobic002G401800 Sobic008G073100--Sobic002G401800 Sobic003G387100 Sobic003G387100 Sobic008G073100--Sobic003G387100 Sobic008G073100--Sobic004G336200 Sobic001G309300 Sobic001G309300 Sobic008G073100--Sobic001G309300 Sobic003G077400 Sobic003G077400 Sobic008G073100--Sobic003G077400 Sobic002G272100 Sobic002G272100 Sobic008G073100--Sobic002G272100 Sobic006G106400 Sobic006G106400 Sobic008G073100--Sobic006G106400 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic004G336200--Sobic002G401800 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic004G336200--Sobic006G197300 Sobic007G103400 Sobic007G103400 Sobic010G035400--Sobic007G103400 Sobic007G225500 Sobic007G225500 Sobic010G035400--Sobic007G225500 Sobic010G035400--Sobic004G336200 Sobic004G353100 Sobic004G353100 Sobic010G035400--Sobic004G353100 Sobic009G237000 Sobic009G237000 Sobic010G035400--Sobic009G237000 Sobic002G275300 Sobic002G275300 Sobic010G035400--Sobic002G275300 Sobic010G035400--Sobic003G160800 Sobic006G207800 Sobic006G207800 Sobic010G035400--Sobic006G207800 Sobic010G035400--Sobic003G387100 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic005G110400--Sobic008G073100 Sobic005G110400--Sobic001G368500 Sobic005G110400--Sobic001G126300 Sobic005G110400--Sobic002G401800 Sobic005G110400--Sobic004G336200 Sobic005G110400--Sobic003G387100 Sobic005G143500 Sobic005G143500 Sobic005G110400--Sobic005G143500 Sobic005G110400--Sobic003G077400 Sobic003G432500 Sobic003G432500 Sobic005G110400--Sobic003G432500 Sobic002G406700--Sobic004G336200 Sobic002G406700--Sobic008G073100 Sobic003G151500 Sobic003G151500 Sobic002G406700--Sobic003G151500 Sobic002G406700--Sobic003G372900 Sobic002G406700--Sobic002G272100 Sobic002G406700--Sobic003G094350 Sobic002G406700--Sobic003G301300 Sobic009G148500 Sobic009G148500 Sobic002G406700--Sobic009G148500 Sobic002G406700--Sobic003G077400 Sobic003G232700--Sobic001G500600 Sobic003G232700--Sobic006G197300 Sobic002G181000 Sobic002G181000 Sobic003G232700--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic003G232700--Sobic002G043600 Sobic001G495200 Sobic001G495200 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G352500 Sobic003G352500 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G232700--Sobic003G301300 Sobic001G126300--Sobic005G110400 Sobic001G126300--Sobic008G073100 Sobic001G126300--Sobic001G495200 Sobic001G126300--Sobic003G160800 Sobic001G126300--Sobic009G148500 Sobic001G126300--Sobic003G387100 Sobic001G126300--Sobic009G175500 Sobic001G126300--Sobic004G336200 Sobic001G126300--Sobic003G301300
Octagon: transcription factors


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