Gene annotation
Transcriptome id Sobic.003G094350.1
Synonym -
Functional annotation -
UniProt A0A1W0VWE3
Pfam PF08264 PF09334 PF00133 PF13603
Panther DB PTHR11946 PTHR11946:SF7
NCBI CDD -
KEGG Orthology K01869; LARS, leucyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0000166nucleotide binding GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0002161aminoacyl-tRNA editing activity GO:0006429leucyl-tRNA aminoacylation GO:0004823leucine-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT4G04350 : tRNA synthetase class I (I, L, M and V) family protein
RAP-DB (Rice) LOC_Os01g03020.1 : tRNA synthetase class I, putative, expressed
MaizeGDB (Corn) Zm00025a035498
Brachypodium KQK02450
Barley HORVU3Hr1G006320.8 , HORVU3Hr1G006320.9 , HORVU3Hr1G006320.6 , HORVU3Hr1G006320.4 , HORVU3Hr1G006320.5 , HORVU3Hr1G006320.2 , HORVU3Hr1G006320.3 , HORVU3Hr1G006320.1 , HORVU3Hr1G006320.14 , HORVU3Hr1G006320.15 , HORVU3Hr1G006320.16 , HORVU3Hr1G006320.17 , HORVU3Hr1G006320.10 , HORVU3Hr1G006320.11 , HORVU3Hr1G006320.12 , HORVU3Hr1G006320.13 , HORVU3Hr1G006320.18 , HORVU3Hr1G006320.29 , HORVU3Hr1G006320.28 , HORVU3Hr1G006320.21 , HORVU3Hr1G006320.20 , HORVU3Hr1G006320.23 , HORVU3Hr1G006320.24 , HORVU3Hr1G006320.27 , HORVU3Hr1G006320.26 , HORVU3Hr1G006320.38 , HORVU3Hr1G006320.39 , HORVU3Hr1G006320.37 , HORVU3Hr1G006320.34 , HORVU3Hr1G006320.33 , HORVU3Hr1G006320.22 , HORVU3Hr1G006320.43 , HORVU3Hr1G006320.42 , HORVU3Hr1G006320.41 , HORVU3Hr1G006320.40 , HORVU3Hr1G006320.45 , HORVU3Hr1G006320.44
Wheat TraesCS3A02G023800 , TraesCS3A02G023800 , TraesCS3B02G021000 , TraesCS3D02G022400
Populus PNT11282 , PNT11283 , PNS23744


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
3 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
4 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
5 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
6 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
7 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
9 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
10 Sobic.003G233700 SET domain-containing protein, putative, expressed -
11 Sobic.002G405100 elongation factor TS family protein, expressed K02357: tsf, elongation factor Ts
12 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
13 Sobic.006G197300 expressed protein -
14 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
15 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
16 Sobic.007G103400 expressed protein -
17 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
18 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
19 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
20 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein


Gene co-expression network
sample Sobic003G094350 Sobic003G094350 Sobic002G133900 Sobic002G133900 Sobic003G094350--Sobic002G133900 Sobic003G070900 Sobic003G070900 Sobic003G094350--Sobic003G070900 Sobic001G500600 Sobic001G500600 Sobic003G094350--Sobic001G500600 Sobic003G287900 Sobic003G287900 Sobic003G094350--Sobic003G287900 Sobic005G100300 Sobic005G100300 Sobic003G094350--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic003G094350--Sobic002G028400 Sobic004G336200 Sobic004G336200 Sobic003G094350--Sobic004G336200 Sobic010G002000 Sobic010G002000 Sobic003G094350--Sobic010G002000 Sobic004G353100 Sobic004G353100 Sobic003G094350--Sobic004G353100 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic002G133900--Sobic003G287900 Sobic002G405100 Sobic002G405100 Sobic002G133900--Sobic002G405100 Sobic002G133900--Sobic004G353100 Sobic002G133900--Sobic005G100300 Sobic002G133900--Sobic002G028400 Sobic007G103400 Sobic007G103400 Sobic002G133900--Sobic007G103400 Sobic009G170200 Sobic009G170200 Sobic002G133900--Sobic009G170200 Sobic003G070900--Sobic002G133900 Sobic003G070900--Sobic003G287900 Sobic003G070900--Sobic009G170200 Sobic003G070900--Sobic003G094350 Sobic001G118400 Sobic001G118400 Sobic003G070900--Sobic001G118400 Sobic003G070900--Sobic001G500600 Sobic003G070900--Sobic004G353100 Sobic008G074000 Sobic008G074000 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic001G500600--Sobic003G287900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic003G287900--Sobic003G070900 Sobic003G287900--Sobic002G133900 Sobic003G287900--Sobic003G094350 Sobic003G233700 Sobic003G233700 Sobic003G287900--Sobic003G233700 Sobic003G287900--Sobic001G500600 Sobic003G287900--Sobic004G353100 Sobic003G287900--Sobic004G336200 Sobic003G287900--Sobic008G074000 Sobic003G287900--Sobic009G170200 Sobic005G100300--Sobic002G405100 Sobic005G100300--Sobic002G133900 Sobic010G201600 Sobic010G201600 Sobic005G100300--Sobic010G201600 Sobic005G100300--Sobic003G094350 Sobic003G160800 Sobic003G160800 Sobic005G100300--Sobic003G160800 Sobic001G128600 Sobic001G128600 Sobic005G100300--Sobic001G128600 Sobic002G401800 Sobic002G401800 Sobic005G100300--Sobic002G401800 Sobic001G134700 Sobic001G134700 Sobic005G100300--Sobic001G134700 Sobic005G100300--Sobic004G353100 Sobic002G028400--Sobic002G133900 Sobic002G028400--Sobic003G094350 Sobic002G028400--Sobic001G500600 Sobic002G028400--Sobic003G070900 Sobic002G028400--Sobic009G170200 Sobic002G028400--Sobic008G074000 Sobic001G540600 Sobic001G540600 Sobic002G028400--Sobic001G540600 Sobic002G028400--Sobic003G287900 Sobic002G028400--Sobic007G103400 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic008G073100 Sobic008G073100 Sobic004G336200--Sobic008G073100 Sobic004G336200--Sobic001G134700 Sobic005G110400 Sobic005G110400 Sobic004G336200--Sobic005G110400 Sobic004G336200--Sobic006G197300 Sobic010G002000--Sobic003G094350 Sobic008G039600 Sobic008G039600 Sobic010G002000--Sobic008G039600 Sobic001G054100 Sobic001G054100 Sobic010G002000--Sobic001G054100 Sobic010G002000--Sobic001G500600 Sobic010G002000--Sobic002G401800 Sobic009G148500 Sobic009G148500 Sobic010G002000--Sobic009G148500 Sobic005G143500 Sobic005G143500 Sobic010G002000--Sobic005G143500 Sobic010G002000--Sobic004G336200 Sobic010G002000--Sobic003G141100 Sobic004G353100--Sobic007G103400 Sobic009G237000 Sobic009G237000 Sobic004G353100--Sobic009G237000 Sobic004G353100--Sobic002G133900 Sobic002G298800 Sobic002G298800 Sobic004G353100--Sobic002G298800 Sobic004G353100--Sobic010G035400 Sobic004G353100--Sobic003G070900 Sobic004G353100--Sobic003G233700 Sobic009G132000 Sobic009G132000 Sobic004G353100--Sobic009G132000 Sobic004G353100--Sobic009G170200
Octagon: transcription factors


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