Gene annotation
Transcriptome id Sobic.002G405100.2
Synonym Sb02g041940, emb2726
Functional annotation elongation factor TS family protein, expressed
UniProt C5X4S1
Pfam PF00575 PF00889
Panther DB PTHR11741 PTHR11741:SF3
NCBI CDD KOG1071; Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt
KEGG Orthology K02357; tsf, elongation factor Ts
Gene Ontology GO:0003676; nucleic acid binding GO:0006414translational elongation GO:0005622intracellular GO:0003746translation elongation factor activity


Orthologs (automatic annotation)
TAIR AT4G29060 : elongation factor Ts family protein
RAP-DB (Rice) LOC_Os12g35630.1 : elongation factor TS family protein, expressed
MaizeGDB (Corn) Zm00025a036621 , Zm00025a046434 , Zm00025a012767 , Zm00025a015358
Brachypodium KQJ93642
Barley HORVU5Hr1G024470.3 , HORVU5Hr1G024470.4 , HORVU5Hr1G024470.5 , HORVU5Hr1G024470.6 , HORVU5Hr1G024470.1 , HORVU5Hr1G024470.7
Wheat TraesCS5B02G099300 , TraesCS5B02G099300 , TraesCS5D02G105500 , TraesCS5D02G105500 , TraesCS5A02G093200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
3 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
4 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
5 Sobic.010G035400 expressed protein -
6 Sobic.010G201600 tic21, putative, expressed -
7 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
8 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.007G052400 rubredoxin family protein, putative, expressed -
10 Sobic.007G225500 expressed protein -
11 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
12 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
13 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
14 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
15 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
16 Sobic.002G274200 expressed protein -
17 Sobic.007G103400 expressed protein -
18 Sobic.002G272100 expressed protein -
19 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.004G012900 expressed protein -


Gene co-expression network
sample Sobic002G405100 Sobic002G405100 Sobic002G133900 Sobic002G133900 Sobic002G405100--Sobic002G133900 Sobic005G100300 Sobic005G100300 Sobic002G405100--Sobic005G100300 Sobic002G401800 Sobic002G401800 Sobic002G405100--Sobic002G401800 Sobic004G353100 Sobic004G353100 Sobic002G405100--Sobic004G353100 Sobic010G035400 Sobic010G035400 Sobic002G405100--Sobic010G035400 Sobic010G201600 Sobic010G201600 Sobic002G405100--Sobic010G201600 Sobic003G094350 Sobic003G094350 Sobic002G405100--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic002G405100--Sobic004G336200 Sobic007G052400 Sobic007G052400 Sobic002G405100--Sobic007G052400 Sobic003G070900 Sobic003G070900 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic003G287900 Sobic003G287900 Sobic002G133900--Sobic003G287900 Sobic002G133900--Sobic002G405100 Sobic002G133900--Sobic004G353100 Sobic002G133900--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic002G133900--Sobic002G028400 Sobic007G103400 Sobic007G103400 Sobic002G133900--Sobic007G103400 Sobic009G170200 Sobic009G170200 Sobic002G133900--Sobic009G170200 Sobic005G100300--Sobic002G405100 Sobic005G100300--Sobic002G133900 Sobic005G100300--Sobic010G201600 Sobic005G100300--Sobic003G094350 Sobic003G160800 Sobic003G160800 Sobic005G100300--Sobic003G160800 Sobic001G128600 Sobic001G128600 Sobic005G100300--Sobic001G128600 Sobic005G100300--Sobic002G401800 Sobic001G134700 Sobic001G134700 Sobic005G100300--Sobic001G134700 Sobic005G100300--Sobic004G353100 Sobic002G401800--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic002G401800--Sobic008G073100 Sobic002G401800--Sobic002G405100 Sobic004G012900 Sobic004G012900 Sobic002G401800--Sobic004G012900 Sobic002G272100 Sobic002G272100 Sobic002G401800--Sobic002G272100 Sobic005G110400 Sobic005G110400 Sobic002G401800--Sobic005G110400 Sobic002G401800--Sobic005G100300 Sobic001G368500 Sobic001G368500 Sobic002G401800--Sobic001G368500 Sobic003G077400 Sobic003G077400 Sobic002G401800--Sobic003G077400 Sobic004G353100--Sobic007G103400 Sobic009G237000 Sobic009G237000 Sobic004G353100--Sobic009G237000 Sobic004G353100--Sobic002G133900 Sobic002G298800 Sobic002G298800 Sobic004G353100--Sobic002G298800 Sobic004G353100--Sobic010G035400 Sobic004G353100--Sobic003G070900 Sobic003G233700 Sobic003G233700 Sobic004G353100--Sobic003G233700 Sobic009G132000 Sobic009G132000 Sobic004G353100--Sobic009G132000 Sobic004G353100--Sobic009G170200 Sobic010G035400--Sobic007G103400 Sobic007G225500 Sobic007G225500 Sobic010G035400--Sobic007G225500 Sobic010G035400--Sobic004G336200 Sobic010G035400--Sobic004G353100 Sobic010G035400--Sobic009G237000 Sobic002G275300 Sobic002G275300 Sobic010G035400--Sobic002G275300 Sobic010G035400--Sobic003G160800 Sobic006G207800 Sobic006G207800 Sobic010G035400--Sobic006G207800 Sobic003G387100 Sobic003G387100 Sobic010G035400--Sobic003G387100 Sobic010G201600--Sobic005G100300 Sobic010G201600--Sobic002G405100 Sobic010G201600--Sobic001G128600 Sobic010G201600--Sobic002G133900 Sobic002G233700 Sobic002G233700 Sobic010G201600--Sobic002G233700 Sobic010G201600--Sobic002G401800 Sobic004G303200 Sobic004G303200 Sobic010G201600--Sobic004G303200 Sobic010G201600--Sobic007G052400 Sobic010G201600--Sobic003G094350 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic001G500600 Sobic001G500600 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic003G094350--Sobic005G100300 Sobic003G094350--Sobic002G028400 Sobic003G094350--Sobic004G336200 Sobic010G002000 Sobic010G002000 Sobic003G094350--Sobic010G002000 Sobic003G094350--Sobic004G353100 Sobic004G336200--Sobic002G401800 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic010G005500 Sobic010G005500 Sobic007G052400--Sobic010G005500 Sobic003G002300 Sobic003G002300 Sobic007G052400--Sobic003G002300 Sobic007G052400--Sobic004G012900 Sobic008G171300 Sobic008G171300 Sobic007G052400--Sobic008G171300 Sobic007G052400--Sobic007G225500 Sobic009G183700 Sobic009G183700 Sobic007G052400--Sobic009G183700 Sobic009G030900 Sobic009G030900 Sobic007G052400--Sobic009G030900 Sobic008G102000 Sobic008G102000 Sobic007G052400--Sobic008G102000 Sobic007G052400--Sobic002G233700
Octagon: transcription factors


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