Gene annotation
Transcriptome id Sobic.003G287900.2,Sobic.003G287900.1,Sobic.003G287900.3
Synonym Sb03g033850
Functional annotation phenylalanyl-tRNA synthetase, putative, expressed
UniProt A0A1B6Q5X5 , A0A1B6Q5Y0
Pfam PF03147 PF01409
Panther DB PTHR11538 PTHR11538:SF41
NCBI CDD -
KEGG Orthology K01889; FARSA, phenylalanyl-tRNA synthetase alpha chain
Gene Ontology GO:0008033; tRNA processing GO:0006432phenylalanyl-tRNA aminoacylation GO:0005524ATP binding GO:0004826phenylalanine-tRNA ligase activity GO:0000287magnesium ion binding GO:0000049tRNA binding GO:0005737cytoplasm GO:0004812aminoacyl-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT3G58140 : phenylalanyl-tRNA synthetase class IIc family protein
RAP-DB (Rice) LOC_Os12g34860.1 : phenylalanyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a027687 , Zm00025a040094
Brachypodium KQJ86498
Barley -
Wheat TraesCS5A02G096700 , TraesCS5B02G102600 , TraesCS5D02G109400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
2 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
4 Sobic.003G233700 SET domain-containing protein, putative, expressed -
5 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
6 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
7 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
9 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
10 Sobic.002G405100 elongation factor TS family protein, expressed K02357: tsf, elongation factor Ts
11 Sobic.006G197300 expressed protein -
12 Sobic.005G100300 OsClp12 - Putative Clp protease homologue, expressed -
13 Sobic.003G085100 MYB family transcription factor, putative, expressed -
14 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
15 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
16 Sobic.009G132000 expressed protein -
17 Sobic.007G103400 expressed protein -
18 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
19 Sobic.004G019800 MATE domain containing protein, expressed -
20 Sobic.002G258600 expressed protein -


Gene co-expression network
sample Sobic003G287900 Sobic003G287900 Sobic003G070900 Sobic003G070900 Sobic003G287900--Sobic003G070900 Sobic002G133900 Sobic002G133900 Sobic003G287900--Sobic002G133900 Sobic003G094350 Sobic003G094350 Sobic003G287900--Sobic003G094350 Sobic003G233700 Sobic003G233700 Sobic003G287900--Sobic003G233700 Sobic001G500600 Sobic001G500600 Sobic003G287900--Sobic001G500600 Sobic004G353100 Sobic004G353100 Sobic003G287900--Sobic004G353100 Sobic004G336200 Sobic004G336200 Sobic003G287900--Sobic004G336200 Sobic008G074000 Sobic008G074000 Sobic003G287900--Sobic008G074000 Sobic009G170200 Sobic009G170200 Sobic003G287900--Sobic009G170200 Sobic003G070900--Sobic002G133900 Sobic003G070900--Sobic003G287900 Sobic003G070900--Sobic009G170200 Sobic003G070900--Sobic003G094350 Sobic001G118400 Sobic001G118400 Sobic003G070900--Sobic001G118400 Sobic003G070900--Sobic001G500600 Sobic003G070900--Sobic004G353100 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic002G133900--Sobic003G070900 Sobic002G133900--Sobic003G094350 Sobic002G133900--Sobic003G287900 Sobic002G405100 Sobic002G405100 Sobic002G133900--Sobic002G405100 Sobic002G133900--Sobic004G353100 Sobic005G100300 Sobic005G100300 Sobic002G133900--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic002G133900--Sobic002G028400 Sobic007G103400 Sobic007G103400 Sobic002G133900--Sobic007G103400 Sobic002G133900--Sobic009G170200 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic003G094350--Sobic005G100300 Sobic003G094350--Sobic002G028400 Sobic003G094350--Sobic004G336200 Sobic010G002000 Sobic010G002000 Sobic003G094350--Sobic010G002000 Sobic003G094350--Sobic004G353100 Sobic003G233700--Sobic007G103400 Sobic003G233700--Sobic003G287900 Sobic003G233700--Sobic004G353100 Sobic003G233700--Sobic002G133900 Sobic009G237000 Sobic009G237000 Sobic003G233700--Sobic009G237000 Sobic003G160800 Sobic003G160800 Sobic003G233700--Sobic003G160800 Sobic003G233700--Sobic008G074000 Sobic003G233700--Sobic003G094350 Sobic003G233700--Sobic001G500600 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic001G500600--Sobic003G287900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic004G353100--Sobic007G103400 Sobic004G353100--Sobic009G237000 Sobic004G353100--Sobic002G133900 Sobic002G298800 Sobic002G298800 Sobic004G353100--Sobic002G298800 Sobic010G035400 Sobic010G035400 Sobic004G353100--Sobic010G035400 Sobic004G353100--Sobic003G070900 Sobic004G353100--Sobic003G233700 Sobic009G132000 Sobic009G132000 Sobic004G353100--Sobic009G132000 Sobic004G353100--Sobic009G170200 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic008G073100 Sobic008G073100 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic005G110400 Sobic005G110400 Sobic004G336200--Sobic005G110400 Sobic004G336200--Sobic006G197300 Sobic008G074000--Sobic003G070900 Sobic008G074000--Sobic007G103400 Sobic008G074000--Sobic002G133900 Sobic008G074000--Sobic003G233700 Sobic008G074000--Sobic009G237000 Sobic001G504400 Sobic001G504400 Sobic008G074000--Sobic001G504400 Sobic008G074000--Sobic004G353100 Sobic008G074000--Sobic009G170200 Sobic009G219100 Sobic009G219100 Sobic008G074000--Sobic009G219100 Sobic009G170200--Sobic003G070900 Sobic006G232600 Sobic006G232600 Sobic009G170200--Sobic006G232600 Sobic007G087100 Sobic007G087100 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic009G170200--Sobic002G133900 Sobic001G077300 Sobic001G077300 Sobic009G170200--Sobic001G077300 Sobic009G170200--Sobic004G353100 Sobic001G378100 Sobic001G378100 Sobic009G170200--Sobic001G378100 Sobic009G170200--Sobic007G103400
Octagon: transcription factors


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