Gene annotation
Transcriptome id Sobic.003G085100.1
Synonym Sb03g007150
Functional annotation MYB family transcription factor, putative, expressed
UniProt C5XQU9
Pfam PF11805
Panther DB PTHR36891 PTHR36891:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g03660.3 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a023612
Brachypodium KQK02507
Barley HORVU3Hr1G004320.25 , HORVU3Hr1G004320.24 , HORVU3Hr1G004320.22 , HORVU3Hr1G004320.21 , HORVU3Hr1G004320.20 , HORVU3Hr1G004320.8 , HORVU3Hr1G004320.9 , HORVU3Hr1G004320.4 , HORVU3Hr1G004320.5 , HORVU3Hr1G004320.7 , HORVU3Hr1G004320.2 , HORVU3Hr1G004320.3 , HORVU3Hr1G004320.18 , HORVU3Hr1G004320.19 , HORVU3Hr1G004320.16 , HORVU3Hr1G004320.14 , HORVU3Hr1G004320.15 , HORVU3Hr1G004320.12 , HORVU3Hr1G004320.13 , HORVU3Hr1G004320.10 , HORVU3Hr1G004320.11
Wheat TraesCS3A02G046900 , TraesCS3D02G033000 , TraesCS3D02G033000 , TraesCS3D02G033000 , TraesCS3D02G033000 , TraesCS3B02G035900 , TraesCS3B02G035900 , TraesCS3B02G035900
Populus -


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cDNA sequences
Sobic.003G085100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
2 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
3 Sobic.005G111550 - -
4 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
6 Sobic.003G233700 SET domain-containing protein, putative, expressed -
7 Sobic.001G001300 rhodanese-like domain containing protein, putative, expressed -
8 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
9 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
10 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
11 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
12 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
13 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
14 Sobic.002G314400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
15 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
16 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein
17 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
18 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
19 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
20 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic003G085100 Sobic003G085100 Sobic003G150800 Sobic003G150800 Sobic003G085100--Sobic003G150800 Sobic007G005400 Sobic007G005400 Sobic003G085100--Sobic007G005400 Sobic005G111550 Sobic005G111550 Sobic003G085100--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic003G085100--Sobic003G160800 Sobic005G063000 Sobic005G063000 Sobic003G085100--Sobic005G063000 Sobic003G233700 Sobic003G233700 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G287900 Sobic003G287900 Sobic003G085100--Sobic003G287900 Sobic008G001900 Sobic008G001900 Sobic003G085100--Sobic008G001900 Sobic003G150800--Sobic003G085100 Sobic002G042500 Sobic002G042500 Sobic003G150800--Sobic002G042500 Sobic003G150800--Sobic005G111550 Sobic003G150800--Sobic007G005400 Sobic001G037500 Sobic001G037500 Sobic003G150800--Sobic001G037500 Sobic003G150800--Sobic005G063000 Sobic002G314400 Sobic002G314400 Sobic003G150800--Sobic002G314400 Sobic004G328400 Sobic004G328400 Sobic003G150800--Sobic004G328400 Sobic003G141100 Sobic003G141100 Sobic003G150800--Sobic003G141100 Sobic007G005400--Sobic003G085100 Sobic002G118200 Sobic002G118200 Sobic007G005400--Sobic002G118200 Sobic005G084500 Sobic005G084500 Sobic007G005400--Sobic005G084500 Sobic004G238200 Sobic004G238200 Sobic007G005400--Sobic004G238200 Sobic007G005400--Sobic003G150800 Sobic007G005400--Sobic003G287900 Sobic005G231100 Sobic005G231100 Sobic007G005400--Sobic005G231100 Sobic004G337400 Sobic004G337400 Sobic007G005400--Sobic004G337400 Sobic007G185700 Sobic007G185700 Sobic007G005400--Sobic007G185700 Sobic005G111550--Sobic003G085100 Sobic005G111550--Sobic003G150800 Sobic005G111550--Sobic002G042500 Sobic005G111550--Sobic003G160800 Sobic001G500600 Sobic001G500600 Sobic005G111550--Sobic001G500600 Sobic005G111550--Sobic001G037500 Sobic004G298900 Sobic004G298900 Sobic005G111550--Sobic004G298900 Sobic005G111550--Sobic005G063000 Sobic001G465700 Sobic001G465700 Sobic005G111550--Sobic001G465700 Sobic004G336200 Sobic004G336200 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic010G035400 Sobic010G035400 Sobic003G160800--Sobic010G035400 Sobic003G387100 Sobic003G387100 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G160800--Sobic003G233700 Sobic001G134700 Sobic001G134700 Sobic003G160800--Sobic001G134700 Sobic009G175500 Sobic009G175500 Sobic003G160800--Sobic009G175500 Sobic004G211600 Sobic004G211600 Sobic005G063000--Sobic004G211600 Sobic005G204200 Sobic005G204200 Sobic005G063000--Sobic005G204200 Sobic009G121000 Sobic009G121000 Sobic005G063000--Sobic009G121000 Sobic005G001700 Sobic005G001700 Sobic005G063000--Sobic005G001700 Sobic005G063000--Sobic003G085100 Sobic005G063000--Sobic003G160800 Sobic010G214100 Sobic010G214100 Sobic005G063000--Sobic010G214100 Sobic005G063000--Sobic007G103400 Sobic010G043800 Sobic010G043800 Sobic005G063000--Sobic010G043800 Sobic003G233700--Sobic007G103400 Sobic003G233700--Sobic003G287900 Sobic004G353100 Sobic004G353100 Sobic003G233700--Sobic004G353100 Sobic002G133900 Sobic002G133900 Sobic003G233700--Sobic002G133900 Sobic009G237000 Sobic009G237000 Sobic003G233700--Sobic009G237000 Sobic003G233700--Sobic003G160800 Sobic008G074000 Sobic008G074000 Sobic003G233700--Sobic008G074000 Sobic003G094350 Sobic003G094350 Sobic003G233700--Sobic003G094350 Sobic003G233700--Sobic001G500600 Sobic006G280800 Sobic006G280800 Sobic001G001300--Sobic006G280800 Sobic001G001300--Sobic003G085100 Sobic001G001300--Sobic003G160800 Sobic001G001300--Sobic002G133900 Sobic009G148500 Sobic009G148500 Sobic001G001300--Sobic009G148500 Sobic001G001300--Sobic005G111550 Sobic001G001300--Sobic003G287900 Sobic001G001300--Sobic001G500600 Sobic001G001300--Sobic001G134700 Sobic003G070900 Sobic003G070900 Sobic003G287900--Sobic003G070900 Sobic003G287900--Sobic002G133900 Sobic003G287900--Sobic003G094350 Sobic003G287900--Sobic003G233700 Sobic003G287900--Sobic001G500600 Sobic003G287900--Sobic004G353100 Sobic003G287900--Sobic004G336200 Sobic003G287900--Sobic008G074000 Sobic009G170200 Sobic009G170200 Sobic003G287900--Sobic009G170200 Sobic008G001900--Sobic005G001700 Sobic001G073900 Sobic001G073900 Sobic008G001900--Sobic001G073900 Sobic004G235600 Sobic004G235600 Sobic008G001900--Sobic004G235600 Sobic008G001900--Sobic003G085100 Sobic003G332700 Sobic003G332700 Sobic008G001900--Sobic003G332700 Sobic004G054400 Sobic004G054400 Sobic008G001900--Sobic004G054400 Sobic008G001900--Sobic005G063000 Sobic008G001900--Sobic005G204200 Sobic008G001900--Sobic001G465700
Octagon: transcription factors


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