Gene annotation
Transcriptome id Sobic.003G150800.1,Sobic.003G150800.2
Synonym AGY1, Sb03g013090, AtcpSecA
Functional annotation preprotein translocase subunit secA, chloroplast precursor, putative, expressed
UniProt A0A1W0VXG0 , C5XIW8
Pfam PF01043 PF07516 PF07517 PF01043 PF07517 PF07516
Panther DB PTHR30612 PTHR30612:SF4
NCBI CDD -
KEGG Orthology K03070; preprotein translocase subunit SecA
Gene Ontology GO:0017038; protein import GO:0016020membrane GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT4G01800 : Albino or Glassy Yellow 1
RAP-DB (Rice) LOC_Os01g21820.1 : preprotein translocase subunit secA, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a024359
Brachypodium KQK04167 , PNT70445
Barley HORVU3Hr1G041160.7 , HORVU3Hr1G041160.11 , HORVU3Hr1G041160.10 , HORVU3Hr1G041160.13 , HORVU3Hr1G041160.14 , HORVU3Hr1G041160.9 , HORVU3Hr1G041160.8 , HORVU3Hr1G041160.5 , HORVU3Hr1G041160.4 , HORVU3Hr1G041160.6 , HORVU3Hr1G041160.3 , HORVU3Hr1G041160.2 , HORVU3Hr1G041160.12
Wheat TraesCS3D02G196700 , TraesCS3D02G196700 , TraesCS3D02G196700 , TraesCS3D02G196700 , TraesCS3D02G196700 , TraesCS3D02G196700 , TraesCS3D02G196700 , TraesCS3B02G222700 , TraesCS3A02G198400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G085100 MYB family transcription factor, putative, expressed -
2 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
3 Sobic.005G111550 - -
4 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
5 Sobic.001G037500 expressed protein -
6 Sobic.005G063000 short chain dehydrogenase/reductase protein, putative, expressed -
7 Sobic.002G314400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
8 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
9 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
10 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
11 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
12 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.001G001300 rhodanese-like domain containing protein, putative, expressed -
14 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein
15 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
16 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
17 Sobic.006G105800 tyrosyl-tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
18 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
19 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
20 Sobic.009G121000 expressed protein -


Gene co-expression network
sample Sobic003G150800 Sobic003G150800 Sobic003G085100 Sobic003G085100 Sobic003G150800--Sobic003G085100 Sobic002G042500 Sobic002G042500 Sobic003G150800--Sobic002G042500 Sobic005G111550 Sobic005G111550 Sobic003G150800--Sobic005G111550 Sobic007G005400 Sobic007G005400 Sobic003G150800--Sobic007G005400 Sobic001G037500 Sobic001G037500 Sobic003G150800--Sobic001G037500 Sobic005G063000 Sobic005G063000 Sobic003G150800--Sobic005G063000 Sobic002G314400 Sobic002G314400 Sobic003G150800--Sobic002G314400 Sobic004G328400 Sobic004G328400 Sobic003G150800--Sobic004G328400 Sobic003G141100 Sobic003G141100 Sobic003G150800--Sobic003G141100 Sobic003G085100--Sobic003G150800 Sobic003G085100--Sobic007G005400 Sobic003G085100--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic003G085100--Sobic003G160800 Sobic003G085100--Sobic005G063000 Sobic003G233700 Sobic003G233700 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G287900 Sobic003G287900 Sobic003G085100--Sobic003G287900 Sobic008G001900 Sobic008G001900 Sobic003G085100--Sobic008G001900 Sobic002G042500--Sobic001G037500 Sobic002G042500--Sobic003G150800 Sobic002G042500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic002G042500--Sobic004G206200 Sobic002G042500--Sobic003G085100 Sobic002G042500--Sobic003G141100 Sobic002G296100 Sobic002G296100 Sobic002G042500--Sobic002G296100 Sobic007G185700 Sobic007G185700 Sobic002G042500--Sobic007G185700 Sobic001G126300 Sobic001G126300 Sobic002G042500--Sobic001G126300 Sobic005G111550--Sobic003G085100 Sobic005G111550--Sobic003G150800 Sobic005G111550--Sobic002G042500 Sobic005G111550--Sobic003G160800 Sobic001G500600 Sobic001G500600 Sobic005G111550--Sobic001G500600 Sobic005G111550--Sobic001G037500 Sobic004G298900 Sobic004G298900 Sobic005G111550--Sobic004G298900 Sobic005G111550--Sobic005G063000 Sobic001G465700 Sobic001G465700 Sobic005G111550--Sobic001G465700 Sobic007G005400--Sobic003G085100 Sobic002G118200 Sobic002G118200 Sobic007G005400--Sobic002G118200 Sobic005G084500 Sobic005G084500 Sobic007G005400--Sobic005G084500 Sobic004G238200 Sobic004G238200 Sobic007G005400--Sobic004G238200 Sobic007G005400--Sobic003G150800 Sobic007G005400--Sobic003G287900 Sobic005G231100 Sobic005G231100 Sobic007G005400--Sobic005G231100 Sobic004G337400 Sobic004G337400 Sobic007G005400--Sobic004G337400 Sobic007G005400--Sobic007G185700 Sobic001G037500--Sobic002G042500 Sobic001G054100 Sobic001G054100 Sobic001G037500--Sobic001G054100 Sobic006G273400 Sobic006G273400 Sobic001G037500--Sobic006G273400 Sobic001G037500--Sobic003G150800 Sobic001G037500--Sobic005G111550 Sobic001G037500--Sobic004G206200 Sobic002G081500 Sobic002G081500 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic001G037500--Sobic002G296100 Sobic004G211600 Sobic004G211600 Sobic005G063000--Sobic004G211600 Sobic005G204200 Sobic005G204200 Sobic005G063000--Sobic005G204200 Sobic009G121000 Sobic009G121000 Sobic005G063000--Sobic009G121000 Sobic005G001700 Sobic005G001700 Sobic005G063000--Sobic005G001700 Sobic005G063000--Sobic003G085100 Sobic005G063000--Sobic003G160800 Sobic010G214100 Sobic010G214100 Sobic005G063000--Sobic010G214100 Sobic007G103400 Sobic007G103400 Sobic005G063000--Sobic007G103400 Sobic010G043800 Sobic010G043800 Sobic005G063000--Sobic010G043800 Sobic002G314400--Sobic003G085100 Sobic002G314400--Sobic003G150800 Sobic002G314400--Sobic005G111550 Sobic002G314400--Sobic005G063000 Sobic004G235600 Sobic004G235600 Sobic002G314400--Sobic004G235600 Sobic002G314400--Sobic001G001300 Sobic002G314400--Sobic008G001900 Sobic002G314400--Sobic005G001700 Sobic002G314400--Sobic010G214100 Sobic004G328400--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic004G328400--Sobic003G232700 Sobic004G328400--Sobic003G372900 Sobic004G328400--Sobic001G500600 Sobic004G336200 Sobic004G336200 Sobic004G328400--Sobic004G336200 Sobic004G328400--Sobic001G054100 Sobic003G301300 Sobic003G301300 Sobic004G328400--Sobic003G301300 Sobic004G328400--Sobic003G150800 Sobic004G328400--Sobic003G160800 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic009G148500 Sobic009G148500 Sobic003G141100--Sobic009G148500 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900
Octagon: transcription factors


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