Gene annotation
Transcriptome id Sobic.002G042500.4,Sobic.002G042500.1,Sobic.002G042500.2,Sobic.002G042500.3
Synonym Sb02g003650, EMB2247
Functional annotation valyl-tRNA synthetase, putative, expressed
UniProt A0A1B6Q966 , A0A1W0W2A0 , A0A1W0W285
Pfam PF10458 PF08264 PF00133 PF00133 PF10458 PF08264 PF10458 PF00133 PF08264
Panther DB PTHR11946 PTHR11946:SF76
NCBI CDD -
KEGG Orthology K01873; VARS, valyl-tRNA synthetase
Gene Ontology GO:0006438; valyl-tRNA aminoacylation GO:0005737cytoplasm GO:0005524ATP binding GO:0004832valine-tRNA ligase activity GO:0000166nucleotide binding GO:0006418tRNA aminoacylation for protein translation GO:0004812aminoacyl-tRNA ligase activity GO:0006418tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0006438valyl-tRNA aminoacylation GO:0005737cytoplasm GO:0004832valine-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT5G16715 : ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
RAP-DB (Rice) LOC_Os07g06940.1 : valyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a016126
Brachypodium KQK20810 , KQK20809 , PNT77024 , PNT77025
Barley HORVU2Hr1G056440.24 , HORVU2Hr1G056440.25 , HORVU2Hr1G056440.22 , HORVU2Hr1G056440.23 , HORVU2Hr1G056440.20 , HORVU2Hr1G056440.21 , HORVU2Hr1G056440.28 , HORVU2Hr1G056440.29 , HORVU2Hr1G056440.12 , HORVU2Hr1G056440.7 , HORVU2Hr1G056440.6 , HORVU2Hr1G056440.3 , HORVU2Hr1G056440.2 , HORVU2Hr1G056440.1 , HORVU2Hr1G056440.9 , HORVU2Hr1G056440.8 , HORVU2Hr1G056440.5 , HORVU2Hr1G056440.4 , HORVU2Hr1G056440.26 , HORVU2Hr1G056440.27 , HORVU2Hr1G056440.19 , HORVU2Hr1G056440.18 , HORVU2Hr1G056440.17 , HORVU2Hr1G056440.16 , HORVU2Hr1G056440.15 , HORVU2Hr1G056440.14 , HORVU2Hr1G056440.13 , HORVU2Hr1G056440.11 , HORVU2Hr1G056440.10 , HORVU2Hr1G056440.31 , HORVU2Hr1G056440.33 , HORVU2Hr1G056440.36 , HORVU2Hr1G056440.30 , HORVU2Hr1G056440.32 , HORVU2Hr1G056440.35 , HORVU2Hr1G056440.34
Wheat TraesCS2D02G249200 , TraesCS2D02G249200 , TraesCS2B02G263300 , TraesCS2A02G246900 , TraesCS2A02G246900 , TraesCS2B02G263300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G037500 expressed protein -
2 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
3 Sobic.005G111550 - -
4 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.003G085100 MYB family transcription factor, putative, expressed -
6 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
7 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
9 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
10 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
11 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
13 Sobic.006G038500 tRNA-dihydrouridine synthase, putative, expressed K05539: tRNA-dihydrouridine synthase A
14 Sobic.004G235600 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
16 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
17 Sobic.004G020800 dimethyladenosine transferase, putative, expressed -
18 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
19 Sobic.003G442700 - -
20 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -


Gene co-expression network
sample Sobic002G042500 Sobic002G042500 Sobic001G037500 Sobic001G037500 Sobic002G042500--Sobic001G037500 Sobic003G150800 Sobic003G150800 Sobic002G042500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic002G042500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic002G042500--Sobic004G206200 Sobic003G085100 Sobic003G085100 Sobic002G042500--Sobic003G085100 Sobic003G141100 Sobic003G141100 Sobic002G042500--Sobic003G141100 Sobic002G296100 Sobic002G296100 Sobic002G042500--Sobic002G296100 Sobic007G185700 Sobic007G185700 Sobic002G042500--Sobic007G185700 Sobic001G126300 Sobic001G126300 Sobic002G042500--Sobic001G126300 Sobic001G037500--Sobic002G042500 Sobic001G054100 Sobic001G054100 Sobic001G037500--Sobic001G054100 Sobic006G273400 Sobic006G273400 Sobic001G037500--Sobic006G273400 Sobic001G037500--Sobic003G150800 Sobic001G037500--Sobic005G111550 Sobic001G037500--Sobic004G206200 Sobic002G081500 Sobic002G081500 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic001G037500--Sobic002G296100 Sobic003G150800--Sobic003G085100 Sobic003G150800--Sobic002G042500 Sobic003G150800--Sobic005G111550 Sobic007G005400 Sobic007G005400 Sobic003G150800--Sobic007G005400 Sobic003G150800--Sobic001G037500 Sobic005G063000 Sobic005G063000 Sobic003G150800--Sobic005G063000 Sobic002G314400 Sobic002G314400 Sobic003G150800--Sobic002G314400 Sobic004G328400 Sobic004G328400 Sobic003G150800--Sobic004G328400 Sobic003G150800--Sobic003G141100 Sobic005G111550--Sobic003G085100 Sobic005G111550--Sobic003G150800 Sobic005G111550--Sobic002G042500 Sobic003G160800 Sobic003G160800 Sobic005G111550--Sobic003G160800 Sobic001G500600 Sobic001G500600 Sobic005G111550--Sobic001G500600 Sobic005G111550--Sobic001G037500 Sobic004G298900 Sobic004G298900 Sobic005G111550--Sobic004G298900 Sobic005G111550--Sobic005G063000 Sobic001G465700 Sobic001G465700 Sobic005G111550--Sobic001G465700 Sobic004G206200--Sobic002G042500 Sobic004G206200--Sobic001G037500 Sobic004G206200--Sobic001G054100 Sobic004G206200--Sobic006G273400 Sobic004G206200--Sobic003G141100 Sobic004G206200--Sobic007G185700 Sobic009G223200 Sobic009G223200 Sobic004G206200--Sobic009G223200 Sobic004G206200--Sobic005G111550 Sobic006G210400 Sobic006G210400 Sobic004G206200--Sobic006G210400 Sobic003G085100--Sobic003G150800 Sobic003G085100--Sobic007G005400 Sobic003G085100--Sobic005G111550 Sobic003G085100--Sobic003G160800 Sobic003G085100--Sobic005G063000 Sobic003G233700 Sobic003G233700 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G287900 Sobic003G287900 Sobic003G085100--Sobic003G287900 Sobic008G001900 Sobic008G001900 Sobic003G085100--Sobic008G001900 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic004G336200 Sobic004G336200 Sobic003G141100--Sobic004G336200 Sobic003G232700 Sobic003G232700 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic009G148500 Sobic009G148500 Sobic003G141100--Sobic009G148500 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900 Sobic002G296100--Sobic002G042500 Sobic002G296100--Sobic001G037500 Sobic002G347600 Sobic002G347600 Sobic002G296100--Sobic002G347600 Sobic004G020800 Sobic004G020800 Sobic002G296100--Sobic004G020800 Sobic003G434700 Sobic003G434700 Sobic002G296100--Sobic003G434700 Sobic002G296100--Sobic004G206200 Sobic006G128300 Sobic006G128300 Sobic002G296100--Sobic006G128300 Sobic002G296100--Sobic002G081500 Sobic001G022500 Sobic001G022500 Sobic002G296100--Sobic001G022500 Sobic007G185700--Sobic001G054100 Sobic003G234900 Sobic003G234900 Sobic007G185700--Sobic003G234900 Sobic007G185700--Sobic003G141100 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic001G530900 Sobic001G530900 Sobic007G185700--Sobic001G530900 Sobic003G352500 Sobic003G352500 Sobic007G185700--Sobic003G352500 Sobic001G261573 Sobic001G261573 Sobic007G185700--Sobic001G261573 Sobic005G231100 Sobic005G231100 Sobic007G185700--Sobic005G231100 Sobic005G110400 Sobic005G110400 Sobic001G126300--Sobic005G110400 Sobic008G073100 Sobic008G073100 Sobic001G126300--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic001G126300--Sobic001G495200 Sobic001G126300--Sobic003G160800 Sobic001G126300--Sobic009G148500 Sobic003G387100 Sobic003G387100 Sobic001G126300--Sobic003G387100 Sobic009G175500 Sobic009G175500 Sobic001G126300--Sobic009G175500 Sobic001G126300--Sobic004G336200 Sobic003G301300 Sobic003G301300 Sobic001G126300--Sobic003G301300
Octagon: transcription factors


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