Gene annotation
Transcriptome id Sobic.003G434700.1,Sobic.003G434700.3
Synonym Sb03g046560
Functional annotation tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed
UniProt C5XIL8 , A0A120GUU7
Pfam PF13932 PF01134
Panther DB PTHR11806 PTHR11806:SF4
NCBI CDD -
KEGG Orthology K03495; gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Gene Ontology GO:0008033; tRNA processing


Orthologs (automatic annotation)
TAIR AT2G13440 : glucose-inhibited division family A protein
RAP-DB (Rice) LOC_Os01g72980.1 : tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed
MaizeGDB (Corn) Zm00025a039525 , Zm00025a009284 , Zm00025a025907 , Zm00025a003202 , Zm00025a010211
Brachypodium KQK11652
Barley HORVU3Hr1G110820.9 , HORVU5Hr1G123520.5 , HORVU3Hr1G110820.5 , HORVU3Hr1G110820.10 , HORVU3Hr1G110820.4 , HORVU3Hr1G110820.6 , HORVU3Hr1G110820.1 , HORVU3Hr1G110820.3 , HORVU3Hr1G110820.2 , HORVU5Hr1G123520.1 , HORVU5Hr1G123520.3 , HORVU3Hr1G110820.8 , HORVU5Hr1G025570.1 , HORVU5Hr1G025570.5
Wheat TraesCS3B02G566600 , TraesCS3D02G509800 , TraesCS3A02G503200
Populus -


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cDNA sequences
Sobic.003G434700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
2 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
3 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
4 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
5 Sobic.003G162800 expressed protein -
6 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
7 Sobic.004G225600 - -
8 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
9 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
10 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
11 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
12 Sobic.004G019500 pentatricopeptide, putative, expressed -
13 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
14 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
15 Sobic.004G206200 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
16 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
17 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
18 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
19 Sobic.001G037500 expressed protein -
20 Sobic.002G298100 expressed protein -


Gene co-expression network
sample Sobic003G434700 Sobic003G434700 Sobic001G022500 Sobic001G022500 Sobic003G434700--Sobic001G022500 Sobic003G067100 Sobic003G067100 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G162800 Sobic003G162800 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic004G225600 Sobic004G225600 Sobic003G434700--Sobic004G225600 Sobic001G375000 Sobic001G375000 Sobic003G434700--Sobic001G375000 Sobic003G234900 Sobic003G234900 Sobic003G434700--Sobic003G234900 Sobic001G022500--Sobic003G434700 Sobic001G022500--Sobic004G225600 Sobic004G003900 Sobic004G003900 Sobic001G022500--Sobic004G003900 Sobic001G022500--Sobic003G162800 Sobic001G003900 Sobic001G003900 Sobic001G022500--Sobic001G003900 Sobic001G022500--Sobic003G067100 Sobic001G022500--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic001G022500--Sobic001G099000 Sobic003G327200 Sobic003G327200 Sobic001G022500--Sobic003G327200 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G067100--Sobic003G234900 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic005G072100--Sobic003G434700 Sobic005G072100--Sobic003G067100 Sobic005G072100--Sobic009G129100 Sobic003G168100 Sobic003G168100 Sobic005G072100--Sobic003G168100 Sobic002G127550 Sobic002G127550 Sobic005G072100--Sobic002G127550 Sobic002G316600 Sobic002G316600 Sobic005G072100--Sobic002G316600 Sobic001G145000 Sobic001G145000 Sobic005G072100--Sobic001G145000 Sobic005G072100--Sobic003G234900 Sobic004G244900 Sobic004G244900 Sobic005G072100--Sobic004G244900 Sobic001G037500 Sobic001G037500 Sobic002G042500--Sobic001G037500 Sobic003G150800 Sobic003G150800 Sobic002G042500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic002G042500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic002G042500--Sobic004G206200 Sobic003G085100 Sobic003G085100 Sobic002G042500--Sobic003G085100 Sobic003G141100 Sobic003G141100 Sobic002G042500--Sobic003G141100 Sobic002G296100 Sobic002G296100 Sobic002G042500--Sobic002G296100 Sobic007G185700 Sobic007G185700 Sobic002G042500--Sobic007G185700 Sobic001G126300 Sobic001G126300 Sobic002G042500--Sobic001G126300 Sobic003G162800--Sobic001G375000 Sobic003G162800--Sobic003G327200 Sobic002G156100 Sobic002G156100 Sobic003G162800--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic003G162800--Sobic003G345900 Sobic002G181132 Sobic002G181132 Sobic003G162800--Sobic002G181132 Sobic003G162800--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic010G027200 Sobic010G027200 Sobic003G162800--Sobic010G027200 Sobic001G102500--Sobic003G067100 Sobic001G102500--Sobic005G014700 Sobic010G255100 Sobic010G255100 Sobic001G102500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic001G102500--Sobic006G186600 Sobic003G170200 Sobic003G170200 Sobic001G102500--Sobic003G170200 Sobic002G168300 Sobic002G168300 Sobic001G102500--Sobic002G168300 Sobic001G102500--Sobic003G434700 Sobic006G210400 Sobic006G210400 Sobic001G102500--Sobic006G210400 Sobic001G102500--Sobic004G238900 Sobic004G225600--Sobic001G022500 Sobic004G208600 Sobic004G208600 Sobic004G225600--Sobic004G208600 Sobic004G225600--Sobic003G162800 Sobic004G225600--Sobic001G099000 Sobic007G095500 Sobic007G095500 Sobic004G225600--Sobic007G095500 Sobic004G225600--Sobic006G058100 Sobic004G225600--Sobic001G375000 Sobic004G225600--Sobic003G434700 Sobic005G184300 Sobic005G184300 Sobic004G225600--Sobic005G184300 Sobic003G128400 Sobic003G128400 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic003G234900--Sobic004G163800 Sobic003G234900--Sobic007G185700 Sobic003G234900--Sobic003G067100 Sobic005G231100 Sobic005G231100 Sobic003G234900--Sobic005G231100 Sobic002G431300 Sobic002G431300 Sobic003G234900--Sobic002G431300 Sobic003G234900--Sobic002G043600 Sobic003G234900--Sobic003G141100 Sobic002G343400 Sobic002G343400 Sobic003G234900--Sobic002G343400 Sobic006G038500 Sobic006G038500 Sobic003G234900--Sobic006G038500
Octagon: transcription factors


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