Gene annotation
Transcriptome id Sobic.004G206200.1
Synonym Sb04g025195
Functional annotation mTERF domain containing protein, expressed
UniProt A0A194YQV5
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF9
NCBI CDD -
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT4G14605 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os02g39040.1 : mTERF domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021272
Brachypodium KQK00223
Barley HORVU6Hr1G054650.14 , HORVU6Hr1G054650.12 , HORVU6Hr1G054650.13 , HORVU6Hr1G054650.10 , HORVU6Hr1G054650.11 , HORVU6Hr1G054650.8 , HORVU6Hr1G054650.9 , HORVU6Hr1G054650.4 , HORVU6Hr1G054650.5 , HORVU6Hr1G054650.6 , HORVU6Hr1G054650.7 , HORVU6Hr1G054650.1 , HORVU6Hr1G054650.2 , HORVU6Hr1G054650.3
Wheat TraesCS6A02G214200 , TraesCS6B02G244200 , TraesCS6D02G196900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
2 Sobic.001G037500 expressed protein -
3 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
4 Sobic.006G273400 pentatricopeptide repeat protein, putative, expressed -
5 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
7 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
8 Sobic.005G111550 - -
9 Sobic.006G210400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
10 Sobic.001G261573 - -
11 Sobic.004G357300 uncharacterized ACR, COG1399 family protein, expressed -
12 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
13 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
14 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
15 Sobic.007G069400 pentatricopeptide, putative, expressed -
16 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.003G085100 MYB family transcription factor, putative, expressed -
18 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
19 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
20 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA


Gene co-expression network
sample Sobic004G206200 Sobic004G206200 Sobic002G042500 Sobic002G042500 Sobic004G206200--Sobic002G042500 Sobic001G037500 Sobic001G037500 Sobic004G206200--Sobic001G037500 Sobic001G054100 Sobic001G054100 Sobic004G206200--Sobic001G054100 Sobic006G273400 Sobic006G273400 Sobic004G206200--Sobic006G273400 Sobic003G141100 Sobic003G141100 Sobic004G206200--Sobic003G141100 Sobic007G185700 Sobic007G185700 Sobic004G206200--Sobic007G185700 Sobic009G223200 Sobic009G223200 Sobic004G206200--Sobic009G223200 Sobic005G111550 Sobic005G111550 Sobic004G206200--Sobic005G111550 Sobic006G210400 Sobic006G210400 Sobic004G206200--Sobic006G210400 Sobic002G042500--Sobic001G037500 Sobic003G150800 Sobic003G150800 Sobic002G042500--Sobic003G150800 Sobic002G042500--Sobic005G111550 Sobic002G042500--Sobic004G206200 Sobic003G085100 Sobic003G085100 Sobic002G042500--Sobic003G085100 Sobic002G042500--Sobic003G141100 Sobic002G296100 Sobic002G296100 Sobic002G042500--Sobic002G296100 Sobic002G042500--Sobic007G185700 Sobic001G126300 Sobic001G126300 Sobic002G042500--Sobic001G126300 Sobic001G037500--Sobic002G042500 Sobic001G037500--Sobic001G054100 Sobic001G037500--Sobic006G273400 Sobic001G037500--Sobic003G150800 Sobic001G037500--Sobic005G111550 Sobic001G037500--Sobic004G206200 Sobic002G081500 Sobic002G081500 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic001G037500--Sobic002G296100 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G083100 Sobic001G083100 Sobic001G054100--Sobic001G083100 Sobic002G181000 Sobic002G181000 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic001G054100--Sobic007G185700 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic006G273400--Sobic001G037500 Sobic006G273400--Sobic001G054100 Sobic006G273400--Sobic004G206200 Sobic001G099000 Sobic001G099000 Sobic006G273400--Sobic001G099000 Sobic006G273400--Sobic002G081500 Sobic003G084500 Sobic003G084500 Sobic006G273400--Sobic003G084500 Sobic002G297400 Sobic002G297400 Sobic006G273400--Sobic002G297400 Sobic004G179200 Sobic004G179200 Sobic006G273400--Sobic004G179200 Sobic008G078900 Sobic008G078900 Sobic006G273400--Sobic008G078900 Sobic001G500600 Sobic001G500600 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic004G336200 Sobic004G336200 Sobic003G141100--Sobic004G336200 Sobic003G232700 Sobic003G232700 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic009G148500 Sobic009G148500 Sobic003G141100--Sobic009G148500 Sobic003G160800 Sobic003G160800 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900 Sobic007G185700--Sobic001G054100 Sobic003G234900 Sobic003G234900 Sobic007G185700--Sobic003G234900 Sobic007G185700--Sobic003G141100 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic001G530900 Sobic001G530900 Sobic007G185700--Sobic001G530900 Sobic003G352500 Sobic003G352500 Sobic007G185700--Sobic003G352500 Sobic001G261573 Sobic001G261573 Sobic007G185700--Sobic001G261573 Sobic005G231100 Sobic005G231100 Sobic007G185700--Sobic005G231100 Sobic009G223200--Sobic003G084500 Sobic009G223200--Sobic006G273400 Sobic001G461700 Sobic001G461700 Sobic009G223200--Sobic001G461700 Sobic009G223200--Sobic004G206200 Sobic009G223200--Sobic001G037500 Sobic009G223200--Sobic001G054100 Sobic008G130900 Sobic008G130900 Sobic009G223200--Sobic008G130900 Sobic009G223200--Sobic002G181000 Sobic009G223200--Sobic002G042500 Sobic005G111550--Sobic003G085100 Sobic005G111550--Sobic003G150800 Sobic005G111550--Sobic002G042500 Sobic005G111550--Sobic003G160800 Sobic005G111550--Sobic001G500600 Sobic005G111550--Sobic001G037500 Sobic004G298900 Sobic004G298900 Sobic005G111550--Sobic004G298900 Sobic005G063000 Sobic005G063000 Sobic005G111550--Sobic005G063000 Sobic001G465700 Sobic001G465700 Sobic005G111550--Sobic001G465700 Sobic006G010900 Sobic006G010900 Sobic006G210400--Sobic006G010900 Sobic007G085800 Sobic007G085800 Sobic006G210400--Sobic007G085800 Sobic006G256600 Sobic006G256600 Sobic006G210400--Sobic006G256600 Sobic006G210400--Sobic003G141100 Sobic006G210400--Sobic002G297400 Sobic003G387100 Sobic003G387100 Sobic006G210400--Sobic003G387100 Sobic001G309300 Sobic001G309300 Sobic006G210400--Sobic001G309300 Sobic010G255100 Sobic010G255100 Sobic006G210400--Sobic010G255100 Sobic001G124800 Sobic001G124800 Sobic006G210400--Sobic001G124800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.