Gene annotation
Transcriptome id Sobic.009G129100.2,Sobic.009G129100.1
Synonym EMB2289, SCY2, Sb09g019570
Functional annotation preprotein translocase subunit secY, putative, expressed
UniProt C5YXL5 , A0A1B6P859
Pfam PF00344
Panther DB PTHR10906 PTHR10906:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015031protein transport


Orthologs (automatic annotation)
TAIR AT2G31530 : SecY protein transport family protein
RAP-DB (Rice) LOC_Os05g33020.1 : preprotein translocase subunit secY, putative, expressed
MaizeGDB (Corn) Zm00025a043615
Brachypodium PNT71318 , PNT71319 , PNT71330 , PNT71331 , PNT71332 , PNT71329 , PNT71328 , PNT71323 , PNT71322 , PNT71321 , PNT71320 , PNT71327 , PNT71326 , PNT71325 , PNT71324
Barley HORVU1Hr1G062340.1 , HORVU1Hr1G062340.2 , HORVU1Hr1G062340.3 , HORVU1Hr1G062340.4 , HORVU1Hr1G062340.5 , HORVU1Hr1G062340.6 , HORVU1Hr1G062340.7 , HORVU1Hr1G062340.8 , HORVU1Hr1G062340.9 , HORVU1Hr1G062340.23 , HORVU1Hr1G062340.22 , HORVU1Hr1G062340.21 , HORVU1Hr1G062340.20 , HORVU1Hr1G062340.24 , HORVU1Hr1G062340.18 , HORVU1Hr1G062340.19 , HORVU1Hr1G062340.12 , HORVU1Hr1G062340.13 , HORVU1Hr1G062340.10 , HORVU1Hr1G062340.11 , HORVU1Hr1G062340.16 , HORVU1Hr1G062340.17 , HORVU1Hr1G062340.14 , HORVU1Hr1G062340.15
Wheat TraesCS1D02G248100 , TraesCS1D02G248100 , TraesCS1D02G248100 , TraesCS1A02G248600 , TraesCS1B02G259300 , TraesCS1B02G259300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G168100 BZIP protein, putative, expressed -
2 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
3 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
4 Sobic.010G126000 WD-40 repeat family protein, putative, expressed -
5 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
6 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
7 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
8 Sobic.004G185800 expressed protein -
9 Sobic.009G132700 - -
10 Sobic.004G359100 expressed protein -
11 Sobic.006G216100 expressed protein -
12 Sobic.003G155300 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
13 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
14 Sobic.001G540800 DNA binding protein, putative, expressed -
15 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
16 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
17 Sobic.002G293600 cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
18 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
19 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
20 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase


Gene co-expression network
sample Sobic009G129100 Sobic009G129100 Sobic003G168100 Sobic003G168100 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic003G067100 Sobic003G067100 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic003G234900 Sobic003G234900 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic004G185800 Sobic004G185800 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700 Sobic003G168100--Sobic010G126000 Sobic003G168100--Sobic005G167700 Sobic003G168100--Sobic009G129100 Sobic008G044100 Sobic008G044100 Sobic003G168100--Sobic008G044100 Sobic001G433800 Sobic001G433800 Sobic003G168100--Sobic001G433800 Sobic003G398700 Sobic003G398700 Sobic003G168100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic003G168100--Sobic004G244900 Sobic004G134200 Sobic004G134200 Sobic003G168100--Sobic004G134200 Sobic003G168100--Sobic004G185800 Sobic010G123600 Sobic010G123600 Sobic005G167700--Sobic010G123600 Sobic003G441900 Sobic003G441900 Sobic005G167700--Sobic003G441900 Sobic005G167700--Sobic001G433800 Sobic005G167700--Sobic003G168100 Sobic001G151100 Sobic001G151100 Sobic005G167700--Sobic001G151100 Sobic004G158400 Sobic004G158400 Sobic005G167700--Sobic004G158400 Sobic003G188400 Sobic003G188400 Sobic005G167700--Sobic003G188400 Sobic005G167700--Sobic010G126000 Sobic003G360400 Sobic003G360400 Sobic005G167700--Sobic003G360400 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G067100--Sobic003G234900 Sobic001G102500 Sobic001G102500 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G434700 Sobic003G434700 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic010G126000--Sobic003G168100 Sobic010G126000--Sobic008G044100 Sobic002G127550 Sobic002G127550 Sobic010G126000--Sobic002G127550 Sobic010G126000--Sobic005G167700 Sobic001G227200 Sobic001G227200 Sobic010G126000--Sobic001G227200 Sobic006G096900 Sobic006G096900 Sobic010G126000--Sobic006G096900 Sobic010G126000--Sobic003G398700 Sobic001G219600 Sobic001G219600 Sobic010G126000--Sobic001G219600 Sobic007G136800 Sobic007G136800 Sobic010G126000--Sobic007G136800 Sobic003G234900--Sobic004G163800 Sobic007G185700 Sobic007G185700 Sobic003G234900--Sobic007G185700 Sobic003G234900--Sobic003G067100 Sobic005G231100 Sobic005G231100 Sobic003G234900--Sobic005G231100 Sobic002G431300 Sobic002G431300 Sobic003G234900--Sobic002G431300 Sobic003G234900--Sobic002G043600 Sobic003G141100 Sobic003G141100 Sobic003G234900--Sobic003G141100 Sobic002G343400 Sobic002G343400 Sobic003G234900--Sobic002G343400 Sobic006G038500 Sobic006G038500 Sobic003G234900--Sobic006G038500 Sobic002G424900 Sobic002G424900 Sobic003G120300--Sobic002G424900 Sobic003G120300--Sobic009G129100 Sobic006G216100 Sobic006G216100 Sobic003G120300--Sobic006G216100 Sobic001G455600 Sobic001G455600 Sobic003G120300--Sobic001G455600 Sobic010G034100 Sobic010G034100 Sobic003G120300--Sobic010G034100 Sobic009G107300 Sobic009G107300 Sobic003G120300--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic003G120300--Sobic007G017800 Sobic002G042800 Sobic002G042800 Sobic003G120300--Sobic002G042800 Sobic002G425500 Sobic002G425500 Sobic003G120300--Sobic002G425500 Sobic006G088200 Sobic006G088200 Sobic001G275300--Sobic006G088200 Sobic003G214600 Sobic003G214600 Sobic001G275300--Sobic003G214600 Sobic007G000300 Sobic007G000300 Sobic001G275300--Sobic007G000300 Sobic003G095900 Sobic003G095900 Sobic001G275300--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic001G275300--Sobic006G056700 Sobic001G275300--Sobic004G158400 Sobic001G058200 Sobic001G058200 Sobic001G275300--Sobic001G058200 Sobic007G159900 Sobic007G159900 Sobic001G275300--Sobic007G159900 Sobic001G275300--Sobic005G167700 Sobic006G041600 Sobic006G041600 Sobic004G185800--Sobic006G041600 Sobic004G185800--Sobic001G433800 Sobic004G185800--Sobic003G398700 Sobic004G185800--Sobic003G188400 Sobic008G063300 Sobic008G063300 Sobic004G185800--Sobic008G063300 Sobic004G185800--Sobic006G096900 Sobic006G252900 Sobic006G252900 Sobic004G185800--Sobic006G252900 Sobic004G185800--Sobic003G168100 Sobic004G185800--Sobic002G425500 Sobic005G027400 Sobic005G027400 Sobic009G132700--Sobic005G027400 Sobic004G140600 Sobic004G140600 Sobic009G132700--Sobic004G140600 Sobic003G170900 Sobic003G170900 Sobic009G132700--Sobic003G170900 Sobic009G132700--Sobic001G455600 Sobic002G211800 Sobic002G211800 Sobic009G132700--Sobic002G211800 Sobic009G132700--Sobic006G252900 Sobic009G132700--Sobic001G433800 Sobic001G111850 Sobic001G111850 Sobic009G132700--Sobic001G111850 Sobic009G132700--Sobic003G188400
Octagon: transcription factors


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