Gene annotation
Transcriptome id Sobic.003G155300.1
Synonym Sb03g013540, LPD1, ptlpd1
Functional annotation dihydrolipoyl dehydrogenase, putative, expressed
UniProt A0A1B6Q3D8
Pfam PF01134 PF00070 PF02852
Panther DB PTHR22912 PTHR22912:SF165
NCBI CDD -
KEGG Orthology K00382; DLD, lpd, dihydrolipoamide dehydrogenase
Gene Ontology GO:0008033; tRNA processing GO:0016491oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G16950 : lipoamide dehydrogenase 1
RAP-DB (Rice) LOC_Os01g23610.1 : dihydrolipoyl dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a036195 , Zm00025a036829
Brachypodium KQK07384 , KQK07383 , KQK04233 , PNT71752 , PNT71751
Barley HORVU1Hr1G023060.8 , HORVU1Hr1G023060.2 , HORVU1Hr1G023060.3 , HORVU1Hr1G023060.1 , HORVU1Hr1G023060.6 , HORVU1Hr1G023060.4 , HORVU1Hr1G023060.5 , HORVU1Hr1G023060.7
Wheat TraesCS1B02G124900 , TraesCS1B02G124900 , TraesCS1B02G124900 , TraesCS1D02G107400 , TraesCS1D02G107400 , TraesCS1D02G107400 , TraesCS1D02G107400 , TraesCS1A02G099500 , TraesCS1A02G099500 , TraesCS1A02G099500
Populus -


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cDNA sequences
Sobic.003G155300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
2 Sobic.002G148750 - -
3 Sobic.002G293600 cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
4 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
5 Sobic.003G149300 pentatricopeptide, putative, expressed -
6 Sobic.004G185800 expressed protein -
7 Sobic.002G425500 ATPOT1, putative, expressed -
8 Sobic.006G194400 cyclin-T1-4, putative, expressed K15188: cyclin T
9 Sobic.008G092532 - -
10 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
11 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
12 Sobic.001G540800 DNA binding protein, putative, expressed -
13 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
14 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
15 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
16 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
17 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
18 Sobic.008G150700 protein kinase domain containing protein, expressed -
19 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
20 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1


Gene co-expression network
sample Sobic003G155300 Sobic003G155300 Sobic009G129100 Sobic009G129100 Sobic003G155300--Sobic009G129100 Sobic002G148750 Sobic002G148750 Sobic003G155300--Sobic002G148750 Sobic002G293600 Sobic002G293600 Sobic003G155300--Sobic002G293600 Sobic001G227200 Sobic001G227200 Sobic003G155300--Sobic001G227200 Sobic003G149300 Sobic003G149300 Sobic003G155300--Sobic003G149300 Sobic004G185800 Sobic004G185800 Sobic003G155300--Sobic004G185800 Sobic002G425500 Sobic002G425500 Sobic003G155300--Sobic002G425500 Sobic006G194400 Sobic006G194400 Sobic003G155300--Sobic006G194400 Sobic008G092532 Sobic008G092532 Sobic003G155300--Sobic008G092532 Sobic003G168100 Sobic003G168100 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic003G067100 Sobic003G067100 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic003G234900 Sobic003G234900 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700 Sobic009G002300 Sobic009G002300 Sobic002G148750--Sobic009G002300 Sobic003G217900 Sobic003G217900 Sobic002G148750--Sobic003G217900 Sobic002G148750--Sobic003G155300 Sobic002G148750--Sobic009G129100 Sobic003G217700 Sobic003G217700 Sobic002G148750--Sobic003G217700 Sobic002G148750--Sobic009G132700 Sobic007G159900 Sobic007G159900 Sobic002G148750--Sobic007G159900 Sobic010G140400 Sobic010G140400 Sobic002G148750--Sobic010G140400 Sobic007G136800 Sobic007G136800 Sobic002G148750--Sobic007G136800 Sobic001G382800 Sobic001G382800 Sobic002G293600--Sobic001G382800 Sobic002G293600--Sobic003G067100 Sobic003G040000 Sobic003G040000 Sobic002G293600--Sobic003G040000 Sobic002G293600--Sobic003G149300 Sobic002G293600--Sobic009G129100 Sobic007G095500 Sobic007G095500 Sobic002G293600--Sobic007G095500 Sobic006G058100 Sobic006G058100 Sobic002G293600--Sobic006G058100 Sobic003G128400 Sobic003G128400 Sobic002G293600--Sobic003G128400 Sobic003G434700 Sobic003G434700 Sobic002G293600--Sobic003G434700 Sobic004G140600 Sobic004G140600 Sobic001G227200--Sobic004G140600 Sobic009G177500 Sobic009G177500 Sobic001G227200--Sobic009G177500 Sobic005G106500 Sobic005G106500 Sobic001G227200--Sobic005G106500 Sobic010G139000 Sobic010G139000 Sobic001G227200--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G456900 Sobic001G456900 Sobic001G227200--Sobic001G456900 Sobic003G149300--Sobic002G293600 Sobic003G149300--Sobic003G040000 Sobic009G127400 Sobic009G127400 Sobic003G149300--Sobic009G127400 Sobic003G161000 Sobic003G161000 Sobic003G149300--Sobic003G161000 Sobic001G514100 Sobic001G514100 Sobic003G149300--Sobic001G514100 Sobic003G149300--Sobic003G155300 Sobic005G197300 Sobic005G197300 Sobic003G149300--Sobic005G197300 Sobic001G261573 Sobic001G261573 Sobic003G149300--Sobic001G261573 Sobic003G149300--Sobic009G129100 Sobic006G041600 Sobic006G041600 Sobic004G185800--Sobic006G041600 Sobic001G433800 Sobic001G433800 Sobic004G185800--Sobic001G433800 Sobic003G398700 Sobic003G398700 Sobic004G185800--Sobic003G398700 Sobic003G188400 Sobic003G188400 Sobic004G185800--Sobic003G188400 Sobic008G063300 Sobic008G063300 Sobic004G185800--Sobic008G063300 Sobic006G096900 Sobic006G096900 Sobic004G185800--Sobic006G096900 Sobic006G252900 Sobic006G252900 Sobic004G185800--Sobic006G252900 Sobic004G185800--Sobic003G168100 Sobic004G185800--Sobic002G425500 Sobic001G020000 Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic002G425500--Sobic004G185800 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic008G131000 Sobic008G131000 Sobic006G194400--Sobic008G131000 Sobic006G194400--Sobic005G106500 Sobic006G194400--Sobic001G227200 Sobic007G203200 Sobic007G203200 Sobic006G194400--Sobic007G203200 Sobic001G360900 Sobic001G360900 Sobic006G194400--Sobic001G360900 Sobic010G236400 Sobic010G236400 Sobic006G194400--Sobic010G236400 Sobic003G141500 Sobic003G141500 Sobic006G194400--Sobic003G141500 Sobic002G396000 Sobic002G396000 Sobic006G194400--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic006G194400--Sobic010G209400 Sobic008G092532--Sobic001G227200 Sobic008G092532--Sobic004G258700 Sobic007G054400 Sobic007G054400 Sobic008G092532--Sobic007G054400 Sobic010G277500 Sobic010G277500 Sobic008G092532--Sobic010G277500 Sobic003G101500 Sobic003G101500 Sobic008G092532--Sobic003G101500 Sobic010G172000 Sobic010G172000 Sobic008G092532--Sobic010G172000 Sobic007G225800 Sobic007G225800 Sobic008G092532--Sobic007G225800 Sobic007G210000 Sobic007G210000 Sobic008G092532--Sobic007G210000 Sobic008G092532--Sobic004G107200
Octagon: transcription factors


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