Gene annotation
Transcriptome id Sobic.002G347600.3,Sobic.002G347600.1,Sobic.002G347600.2,Sobic.002G347600.5,Sobic.002G347600.4
Synonym EMB2654
Functional annotation pentatricopeptide containing protein, putative, expressed
UniProt A0A1W0W708 , A0A1B6QF52
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF262
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41720 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g11280.2,LOC_Os07g11280.1 : pentatricopeptide containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048463
Brachypodium KQK20354
Barley HORVU2Hr1G056820.11 , HORVU2Hr1G056820.10 , HORVU2Hr1G056820.9 , HORVU2Hr1G056820.8 , HORVU2Hr1G056820.4 , HORVU2Hr1G056820.7 , HORVU2Hr1G056820.6 , HORVU2Hr1G056820.1 , HORVU2Hr1G056820.2
Wheat TraesCS2A02G239500 , TraesCS2A02G239500 , TraesCS2A02G239500 , TraesCS2A02G239500 , TraesCS2A02G239500 , TraesCS2A02G239500 , TraesCS2A02G239500 , TraesCS2A02G239500 , TraesCS2D02G244500 , TraesCS2D02G244500 , TraesCS2D02G244500 , TraesCS2B02G269700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G038500 tRNA-dihydrouridine synthase, putative, expressed K05539: tRNA-dihydrouridine synthase A
2 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
3 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.008G091400 nucleoside diphosphate kinase, putative, expressed -
5 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
6 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
7 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
8 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
9 Sobic.009G121000 expressed protein -
10 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
11 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
12 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.003G077700 DUF647 domain containing protein, putative, expressed -
14 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
15 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
16 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
17 Sobic.002G296100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
18 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
19 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
20 Sobic.001G516901 - -


Gene co-expression network
sample Sobic002G347600 Sobic002G347600 Sobic006G038500 Sobic006G038500 Sobic002G347600--Sobic006G038500 Sobic003G301300 Sobic003G301300 Sobic002G347600--Sobic003G301300 Sobic004G336200 Sobic004G336200 Sobic002G347600--Sobic004G336200 Sobic008G091400 Sobic008G091400 Sobic002G347600--Sobic008G091400 Sobic006G128300 Sobic006G128300 Sobic002G347600--Sobic006G128300 Sobic003G247400 Sobic003G247400 Sobic002G347600--Sobic003G247400 Sobic003G141100 Sobic003G141100 Sobic002G347600--Sobic003G141100 Sobic004G328400 Sobic004G328400 Sobic002G347600--Sobic004G328400 Sobic009G121000 Sobic009G121000 Sobic002G347600--Sobic009G121000 Sobic006G038500--Sobic002G347600 Sobic001G465700 Sobic001G465700 Sobic006G038500--Sobic001G465700 Sobic004G120100 Sobic004G120100 Sobic006G038500--Sobic004G120100 Sobic001G126300 Sobic001G126300 Sobic006G038500--Sobic001G126300 Sobic006G038500--Sobic003G141100 Sobic006G038500--Sobic006G128300 Sobic001G516901 Sobic001G516901 Sobic006G038500--Sobic001G516901 Sobic003G232700 Sobic003G232700 Sobic006G038500--Sobic003G232700 Sobic003G160800 Sobic003G160800 Sobic006G038500--Sobic003G160800 Sobic008G073100 Sobic008G073100 Sobic003G301300--Sobic008G073100 Sobic001G500600 Sobic001G500600 Sobic003G301300--Sobic001G500600 Sobic003G301300--Sobic004G336200 Sobic010G035400 Sobic010G035400 Sobic003G301300--Sobic010G035400 Sobic003G301300--Sobic003G160800 Sobic005G110400 Sobic005G110400 Sobic003G301300--Sobic005G110400 Sobic002G406700 Sobic002G406700 Sobic003G301300--Sobic002G406700 Sobic003G301300--Sobic003G232700 Sobic003G301300--Sobic001G126300 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic006G197300 Sobic006G197300 Sobic004G336200--Sobic006G197300 Sobic008G091400--Sobic002G347600 Sobic008G091400--Sobic010G035400 Sobic007G136200 Sobic007G136200 Sobic008G091400--Sobic007G136200 Sobic002G220900 Sobic002G220900 Sobic008G091400--Sobic002G220900 SobicK031800 SobicK031800 Sobic008G091400--SobicK031800 Sobic004G337400 Sobic004G337400 Sobic008G091400--Sobic004G337400 Sobic006G077400 Sobic006G077400 Sobic008G091400--Sobic006G077400 Sobic007G225500 Sobic007G225500 Sobic008G091400--Sobic007G225500 Sobic005G073200 Sobic005G073200 Sobic008G091400--Sobic005G073200 Sobic002G218500 Sobic002G218500 Sobic006G128300--Sobic002G218500 Sobic004G079800 Sobic004G079800 Sobic006G128300--Sobic004G079800 Sobic006G128300--Sobic006G038500 Sobic002G431300 Sobic002G431300 Sobic006G128300--Sobic002G431300 Sobic006G128300--Sobic002G347600 Sobic002G042500 Sobic002G042500 Sobic006G128300--Sobic002G042500 Sobic008G001900 Sobic008G001900 Sobic006G128300--Sobic008G001900 Sobic006G128300--Sobic001G126300 Sobic006G031800 Sobic006G031800 Sobic006G128300--Sobic006G031800 Sobic001G198100 Sobic001G198100 Sobic003G247400--Sobic001G198100 Sobic003G276300 Sobic003G276300 Sobic003G247400--Sobic003G276300 Sobic003G247400--Sobic009G121000 Sobic010G043800 Sobic010G043800 Sobic003G247400--Sobic010G043800 Sobic010G002700 Sobic010G002700 Sobic003G247400--Sobic010G002700 Sobic003G017100 Sobic003G017100 Sobic003G247400--Sobic003G017100 Sobic007G185700 Sobic007G185700 Sobic003G247400--Sobic007G185700 Sobic003G247400--Sobic007G136200 Sobic001G468700 Sobic001G468700 Sobic003G247400--Sobic001G468700 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G372900 Sobic003G372900 Sobic003G141100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic003G141100--Sobic001G054100 Sobic009G148500 Sobic009G148500 Sobic003G141100--Sobic009G148500 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900 Sobic004G328400--Sobic003G141100 Sobic004G328400--Sobic003G232700 Sobic004G328400--Sobic003G372900 Sobic004G328400--Sobic001G500600 Sobic004G328400--Sobic004G336200 Sobic004G328400--Sobic001G054100 Sobic004G328400--Sobic003G301300 Sobic003G150800 Sobic003G150800 Sobic004G328400--Sobic003G150800 Sobic004G328400--Sobic003G160800 Sobic009G121000--Sobic010G043800 Sobic005G063000 Sobic005G063000 Sobic009G121000--Sobic005G063000 Sobic009G121000--Sobic003G247400 Sobic009G121000--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic009G121000--Sobic006G142600 Sobic009G121000--Sobic003G160800 Sobic009G121000--Sobic003G276300 Sobic007G103400 Sobic007G103400 Sobic009G121000--Sobic007G103400 Sobic009G121000--Sobic010G002700
Octagon: transcription factors


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