Gene annotation
Transcriptome id Sobic.006G038500.1
Synonym Sb06g006720
Functional annotation tRNA-dihydrouridine synthase, putative, expressed
UniProt C5YDS7
Pfam PF01207
Panther DB PTHR11082 PTHR11082:SF29
NCBI CDD KOG2335; tRNA-dihydrouridine synthase
KEGG Orthology K05539; tRNA-dihydrouridine synthase A
Gene Ontology GO:0017150; tRNA dihydrouridine synthase activity GO:0008033tRNA processing


Orthologs (automatic annotation)
TAIR AT3G63510 : FMN-linked oxidoreductases superfamily protein
RAP-DB (Rice) LOC_Os04g20990.1 : tRNA-dihydrouridine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a012077
Brachypodium KQJ81908 , KQJ81907
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G038500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
2 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
3 Sobic.004G120100 phosphoglucan, water dikinase, chloroplast precursor, putative, expressed K15535: phosphoglucan, water dikinase
4 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase
5 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
7 Sobic.001G516901 - -
8 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
9 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
11 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
12 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
13 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
14 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
15 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
16 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
17 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
18 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
19 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
20 Sobic.001G198400 mutS domain V family protein, expressed -


Gene co-expression network
sample Sobic006G038500 Sobic006G038500 Sobic002G347600 Sobic002G347600 Sobic006G038500--Sobic002G347600 Sobic001G465700 Sobic001G465700 Sobic006G038500--Sobic001G465700 Sobic004G120100 Sobic004G120100 Sobic006G038500--Sobic004G120100 Sobic001G126300 Sobic001G126300 Sobic006G038500--Sobic001G126300 Sobic003G141100 Sobic003G141100 Sobic006G038500--Sobic003G141100 Sobic006G128300 Sobic006G128300 Sobic006G038500--Sobic006G128300 Sobic001G516901 Sobic001G516901 Sobic006G038500--Sobic001G516901 Sobic003G232700 Sobic003G232700 Sobic006G038500--Sobic003G232700 Sobic003G160800 Sobic003G160800 Sobic006G038500--Sobic003G160800 Sobic002G347600--Sobic006G038500 Sobic003G301300 Sobic003G301300 Sobic002G347600--Sobic003G301300 Sobic004G336200 Sobic004G336200 Sobic002G347600--Sobic004G336200 Sobic008G091400 Sobic008G091400 Sobic002G347600--Sobic008G091400 Sobic002G347600--Sobic006G128300 Sobic003G247400 Sobic003G247400 Sobic002G347600--Sobic003G247400 Sobic002G347600--Sobic003G141100 Sobic004G328400 Sobic004G328400 Sobic002G347600--Sobic004G328400 Sobic009G121000 Sobic009G121000 Sobic002G347600--Sobic009G121000 Sobic001G465700--Sobic006G038500 Sobic010G043800 Sobic010G043800 Sobic001G465700--Sobic010G043800 Sobic005G111550 Sobic005G111550 Sobic001G465700--Sobic005G111550 Sobic003G442700 Sobic003G442700 Sobic001G465700--Sobic003G442700 Sobic008G001900 Sobic008G001900 Sobic001G465700--Sobic008G001900 Sobic004G294700 Sobic004G294700 Sobic001G465700--Sobic004G294700 Sobic001G530900 Sobic001G530900 Sobic001G465700--Sobic001G530900 Sobic004G298900 Sobic004G298900 Sobic001G465700--Sobic004G298900 Sobic006G031800 Sobic006G031800 Sobic001G465700--Sobic006G031800 Sobic004G163800 Sobic004G163800 Sobic004G120100--Sobic004G163800 Sobic007G136200 Sobic007G136200 Sobic004G120100--Sobic007G136200 Sobic004G120100--Sobic006G038500 Sobic004G120100--Sobic003G232700 Sobic004G120100--Sobic001G516901 Sobic005G084500 Sobic005G084500 Sobic004G120100--Sobic005G084500 Sobic003G234900 Sobic003G234900 Sobic004G120100--Sobic003G234900 Sobic004G238200 Sobic004G238200 Sobic004G120100--Sobic004G238200 Sobic002G043600 Sobic002G043600 Sobic004G120100--Sobic002G043600 Sobic005G110400 Sobic005G110400 Sobic001G126300--Sobic005G110400 Sobic008G073100 Sobic008G073100 Sobic001G126300--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic001G126300--Sobic001G495200 Sobic001G126300--Sobic003G160800 Sobic009G148500 Sobic009G148500 Sobic001G126300--Sobic009G148500 Sobic003G387100 Sobic003G387100 Sobic001G126300--Sobic003G387100 Sobic009G175500 Sobic009G175500 Sobic001G126300--Sobic009G175500 Sobic001G126300--Sobic004G336200 Sobic001G126300--Sobic003G301300 Sobic001G500600 Sobic001G500600 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G372900 Sobic003G372900 Sobic003G141100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic003G141100--Sobic001G054100 Sobic003G141100--Sobic009G148500 Sobic003G141100--Sobic003G160800 Sobic005G002900 Sobic005G002900 Sobic003G141100--Sobic005G002900 Sobic002G218500 Sobic002G218500 Sobic006G128300--Sobic002G218500 Sobic004G079800 Sobic004G079800 Sobic006G128300--Sobic004G079800 Sobic006G128300--Sobic006G038500 Sobic002G431300 Sobic002G431300 Sobic006G128300--Sobic002G431300 Sobic006G128300--Sobic002G347600 Sobic002G042500 Sobic002G042500 Sobic006G128300--Sobic002G042500 Sobic006G128300--Sobic008G001900 Sobic006G128300--Sobic001G126300 Sobic006G128300--Sobic006G031800 Sobic001G516901--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic001G516901--Sobic006G197300 Sobic001G516901--Sobic004G336200 Sobic001G516901--Sobic002G043600 Sobic009G024300 Sobic009G024300 Sobic001G516901--Sobic009G024300 Sobic010G035400 Sobic010G035400 Sobic001G516901--Sobic010G035400 Sobic001G516901--Sobic004G238200 Sobic002G258600 Sobic002G258600 Sobic001G516901--Sobic002G258600 Sobic001G516901--Sobic003G160800 Sobic003G232700--Sobic001G500600 Sobic003G232700--Sobic006G197300 Sobic002G181000 Sobic002G181000 Sobic003G232700--Sobic002G181000 Sobic003G232700--Sobic002G043600 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G352500 Sobic003G352500 Sobic003G232700--Sobic003G352500 Sobic003G232700--Sobic004G238200 Sobic003G232700--Sobic003G301300 Sobic003G160800--Sobic004G336200 Sobic005G100300 Sobic005G100300 Sobic003G160800--Sobic005G100300 Sobic003G160800--Sobic010G035400 Sobic003G160800--Sobic003G387100 Sobic007G103400 Sobic007G103400 Sobic003G160800--Sobic007G103400 Sobic002G112400 Sobic002G112400 Sobic003G160800--Sobic002G112400 Sobic003G233700 Sobic003G233700 Sobic003G160800--Sobic003G233700 Sobic001G134700 Sobic001G134700 Sobic003G160800--Sobic001G134700 Sobic003G160800--Sobic009G175500
Octagon: transcription factors


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