Gene annotation
Transcriptome id Sobic.003G232700.1
Synonym ATDEF2, DEF2, PDF1B, Sb03g029040
Functional annotation peptide deformylase, putative, expressed
UniProt C5XEI7
Pfam PF01327
Panther DB PTHR10458 PTHR10458:SF2
NCBI CDD KOG3137; Peptide deformylase
KEGG Orthology K01462; PDF, peptide deformylase
Gene Ontology GO:0005506; iron ion binding


Orthologs (automatic annotation)
TAIR AT5G14660 : peptide deformylase 1B
RAP-DB (Rice) LOC_Os01g45070.1 : peptide deformylase, putative, expressed
MaizeGDB (Corn) Zm00025a038648
Brachypodium -
Barley -
Wheat TraesCS3A02G225700 , TraesCS3D02G223800 , TraesCS3B02G258700
Populus -


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cDNA sequences
Sobic.003G232700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
2 Sobic.006G197300 expressed protein -
3 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
4 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
5 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
6 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
7 Sobic.003G352500 ribonuclease protein, putative, expressed -
8 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
9 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
10 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
11 Sobic.004G333400 COBW domain containing protein, putative, expressed -
12 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
13 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
15 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
16 Sobic.001G516901 - -
17 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
18 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
19 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
20 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein


Gene co-expression network
sample Sobic003G232700 Sobic003G232700 Sobic001G500600 Sobic001G500600 Sobic003G232700--Sobic001G500600 Sobic006G197300 Sobic006G197300 Sobic003G232700--Sobic006G197300 Sobic002G181000 Sobic002G181000 Sobic003G232700--Sobic002G181000 Sobic002G043600 Sobic002G043600 Sobic003G232700--Sobic002G043600 Sobic001G495200 Sobic001G495200 Sobic003G232700--Sobic001G495200 Sobic003G141100 Sobic003G141100 Sobic003G232700--Sobic003G141100 Sobic003G352500 Sobic003G352500 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G301300 Sobic003G301300 Sobic003G232700--Sobic003G301300 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic001G500600--Sobic004G336200 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic001G500600--Sobic003G141100 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic003G372900 Sobic003G372900 Sobic001G500600--Sobic003G372900 Sobic006G197300--Sobic001G500600 Sobic006G197300--Sobic004G336200 Sobic006G197300--Sobic003G232700 Sobic006G197300--Sobic003G094350 Sobic001G516901 Sobic001G516901 Sobic006G197300--Sobic001G516901 Sobic006G197300--Sobic003G070900 Sobic006G197300--Sobic003G287900 Sobic001G436400 Sobic001G436400 Sobic006G197300--Sobic001G436400 Sobic007G103400 Sobic007G103400 Sobic006G197300--Sobic007G103400 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic002G181000--Sobic001G495200 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic002G043600--Sobic003G232700 Sobic002G043600--Sobic002G181000 Sobic002G043600--Sobic001G516901 Sobic002G043600--Sobic003G352500 Sobic004G163800 Sobic004G163800 Sobic002G043600--Sobic004G163800 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic001G126300 Sobic001G126300 Sobic001G495200--Sobic001G126300 Sobic001G495200--Sobic003G232700 Sobic004G336000 Sobic004G336000 Sobic001G495200--Sobic004G336000 Sobic001G495200--Sobic004G011300 Sobic005G143500 Sobic005G143500 Sobic001G495200--Sobic005G143500 Sobic006G106400 Sobic006G106400 Sobic001G495200--Sobic006G106400 Sobic001G495200--Sobic002G181000 Sobic005G110400 Sobic005G110400 Sobic001G495200--Sobic005G110400 Sobic001G495200--Sobic002G043600 Sobic003G141100--Sobic001G500600 Sobic004G328400 Sobic004G328400 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic003G141100--Sobic009G148500 Sobic003G160800 Sobic003G160800 Sobic003G141100--Sobic003G160800 Sobic003G141100--Sobic005G002900 Sobic003G352500--Sobic003G232700 Sobic003G352500--Sobic002G043600 Sobic003G352500--Sobic002G181000 Sobic007G185700 Sobic007G185700 Sobic003G352500--Sobic007G185700 Sobic003G352500--Sobic003G141100 Sobic003G352500--Sobic001G054100 Sobic006G270200 Sobic006G270200 Sobic003G352500--Sobic006G270200 Sobic001G028100 Sobic001G028100 Sobic003G352500--Sobic001G028100 Sobic003G352500--Sobic001G500600 Sobic004G238200--Sobic003G232700 Sobic004G207400 Sobic004G207400 Sobic004G238200--Sobic004G207400 Sobic004G238200--Sobic001G500600 Sobic005G084500 Sobic005G084500 Sobic004G238200--Sobic005G084500 Sobic004G238200--Sobic001G516901 Sobic002G072400 Sobic002G072400 Sobic004G238200--Sobic002G072400 Sobic007G005400 Sobic007G005400 Sobic004G238200--Sobic007G005400 Sobic004G238200--Sobic006G197300 Sobic006G232600 Sobic006G232600 Sobic004G238200--Sobic006G232600 Sobic008G073100 Sobic008G073100 Sobic003G301300--Sobic008G073100 Sobic003G301300--Sobic001G500600 Sobic003G301300--Sobic004G336200 Sobic010G035400 Sobic010G035400 Sobic003G301300--Sobic010G035400 Sobic003G301300--Sobic003G160800 Sobic003G301300--Sobic005G110400 Sobic002G406700 Sobic002G406700 Sobic003G301300--Sobic002G406700 Sobic003G301300--Sobic003G232700 Sobic003G301300--Sobic001G126300
Octagon: transcription factors


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