Gene annotation
Transcriptome id Sobic.003G372900.1
Synonym Sb03g041350
Functional annotation deoxynucleoside kinase family, putative, expressed
UniProt C5XRB3
Pfam PF01712
Panther DB PTHR10513 PTHR10513:SF24
NCBI CDD KOG4235; Mitochondrial thymidine kinase 2/deoxyguanosine kinase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72040 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g65350.1 : deoxynucleoside kinase family, putative, expressed
MaizeGDB (Corn) Zm00025a026628
Brachypodium KQK06098 , KQK06099 , KQK10835
Barley HORVU3Hr1G082190.5 , HORVU3Hr1G082190.4 , HORVU3Hr1G082190.1 , HORVU3Hr1G082190.3 , HORVU3Hr1G082190.2
Wheat TraesCS1B02G279500 , TraesCS3D02G377200 , TraesCS3B02G416300 , TraesCS1D02G269100 , TraesCS3A02G384300 , TraesCS1A02G269000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
2 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
3 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
4 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
5 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
7 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.004G333400 COBW domain containing protein, putative, expressed -
9 Sobic.006G280800 expressed protein -
10 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
11 Sobic.006G197300 expressed protein -
12 Sobic.004G328400 translation initiation factor IF-3, putative, expressed K02520: infC, translation initiation factor IF-3
13 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
14 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
15 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
16 Sobic.008G096800 nnrU, putative, expressed K15744: zeta-carotene isomerase
17 Sobic.010G002000 glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed K14164: glycyl-tRNA synthetase
18 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
19 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
20 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin


Gene co-expression network
sample Sobic003G372900 Sobic003G372900 Sobic001G500600 Sobic001G500600 Sobic003G372900--Sobic001G500600 Sobic001G054100 Sobic001G054100 Sobic003G372900--Sobic001G054100 Sobic001G083100 Sobic001G083100 Sobic003G372900--Sobic001G083100 Sobic002G406700 Sobic002G406700 Sobic003G372900--Sobic002G406700 Sobic003G141100 Sobic003G141100 Sobic003G372900--Sobic003G141100 Sobic003G094350 Sobic003G094350 Sobic003G372900--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic003G372900--Sobic004G336200 Sobic004G333400 Sobic004G333400 Sobic003G372900--Sobic004G333400 Sobic006G280800 Sobic006G280800 Sobic003G372900--Sobic006G280800 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic001G500600--Sobic003G372900 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic001G054100--Sobic003G372900 Sobic001G054100--Sobic001G083100 Sobic002G181000 Sobic002G181000 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic010G002000 Sobic010G002000 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic005G002900 Sobic005G002900 Sobic001G083100--Sobic005G002900 Sobic009G148500 Sobic009G148500 Sobic001G083100--Sobic009G148500 Sobic008G039600 Sobic008G039600 Sobic001G083100--Sobic008G039600 Sobic001G469933 Sobic001G469933 Sobic001G083100--Sobic001G469933 Sobic006G055800 Sobic006G055800 Sobic001G083100--Sobic006G055800 Sobic002G272100 Sobic002G272100 Sobic001G083100--Sobic002G272100 Sobic001G083100--Sobic003G372900 Sobic001G083100--Sobic001G054100 Sobic008G073100 Sobic008G073100 Sobic001G083100--Sobic008G073100 Sobic002G406700--Sobic004G336200 Sobic002G406700--Sobic008G073100 Sobic003G151500 Sobic003G151500 Sobic002G406700--Sobic003G151500 Sobic002G406700--Sobic003G372900 Sobic002G406700--Sobic002G272100 Sobic002G406700--Sobic003G094350 Sobic003G301300 Sobic003G301300 Sobic002G406700--Sobic003G301300 Sobic002G406700--Sobic009G148500 Sobic003G077400 Sobic003G077400 Sobic002G406700--Sobic003G077400 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic003G141100--Sobic009G148500 Sobic003G160800 Sobic003G160800 Sobic003G141100--Sobic003G160800 Sobic003G141100--Sobic005G002900 Sobic003G094350--Sobic002G133900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G094350--Sobic003G287900 Sobic005G100300 Sobic005G100300 Sobic003G094350--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic003G094350--Sobic002G028400 Sobic003G094350--Sobic004G336200 Sobic003G094350--Sobic010G002000 Sobic004G353100 Sobic004G353100 Sobic003G094350--Sobic004G353100 Sobic002G401800 Sobic002G401800 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic005G110400 Sobic005G110400 Sobic004G336200--Sobic005G110400 Sobic004G336200--Sobic006G197300 Sobic003G334100 Sobic003G334100 Sobic004G333400--Sobic003G334100 Sobic004G333400--Sobic001G500600 Sobic010G183400 Sobic010G183400 Sobic004G333400--Sobic010G183400 Sobic001G450600 Sobic001G450600 Sobic004G333400--Sobic001G450600 Sobic004G333400--Sobic002G181000 Sobic004G333400--Sobic006G280800 Sobic004G333400--Sobic003G372900 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic001G001300 Sobic001G001300 Sobic006G280800--Sobic001G001300 Sobic006G280800--Sobic001G500600 Sobic006G280800--Sobic003G094350 Sobic006G280800--Sobic004G333400 Sobic006G280800--Sobic003G070900 Sobic006G280800--Sobic003G372900 Sobic006G280800--Sobic002G133900 Sobic008G006100 Sobic008G006100 Sobic006G280800--Sobic008G006100 Sobic006G280800--Sobic001G134700
Octagon: transcription factors


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