Gene annotation
Transcriptome id Sobic.004G333400.1,Sobic.004G333400.2
Synonym Sb04g036180, PTAC17
Functional annotation COBW domain containing protein, putative, expressed
UniProt A0A194YSX3 , A0A194YSS1
Pfam PF07683 PF02492
Panther DB PTHR13748 PTHR13748:SF43
NCBI CDD KOG2743; Cobalamin synthesis protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80480 : plastid transcriptionally active 17
RAP-DB (Rice) LOC_Os02g55630.1 : COBW domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022500
Brachypodium KQK01191
Barley HORVU6Hr1G086970.6 , HORVU6Hr1G086970.7 , HORVU6Hr1G086970.4 , HORVU6Hr1G086970.5 , HORVU6Hr1G086970.2 , HORVU6Hr1G086970.3 , HORVU6Hr1G086970.1 , HORVU6Hr1G086970.8 , HORVU6Hr1G086970.9 , HORVU6Hr1G086970.10
Wheat TraesCS6A02G367100 , TraesCS6B02G402400 , TraesCS6D02G350100
Populus PNT55604 , PNT55602 , PNT55601 , PNT55603


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cDNA sequences
Sobic.004G333400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G334100 zinc finger family protein, putative, expressed -
2 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
3 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
4 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
5 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
6 Sobic.006G280800 expressed protein -
7 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
8 Sobic.003G232700 peptide deformylase, putative, expressed K01462: PDF, peptide deformylase
9 Sobic.001G283700 acyltransferase, putative, expressed K00630: glycerol-3-phosphate O-acyltransferase
10 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
11 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
12 Sobic.006G214700 APO, putative, expressed -
13 Sobic.002G331800 PPR repeat containing protein, expressed -
14 Sobic.006G197300 expressed protein -
15 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
16 Sobic.004G248400 APO, putative, expressed -
17 Sobic.006G050400 expressed protein -
18 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
19 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
20 Sobic.008G063200 expressed protein -


Gene co-expression network
sample Sobic004G333400 Sobic004G333400 Sobic003G334100 Sobic003G334100 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic010G183400 Sobic010G183400 Sobic004G333400--Sobic010G183400 Sobic001G450600 Sobic001G450600 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic003G334100--Sobic004G333400 Sobic003G334100--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic003G334100--Sobic003G084500 Sobic003G334100--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic003G334100--Sobic002G331800 Sobic003G334100--Sobic002G181000 Sobic009G052700 Sobic009G052700 Sobic003G334100--Sobic009G052700 Sobic004G144000 Sobic004G144000 Sobic003G334100--Sobic004G144000 Sobic009G234200 Sobic009G234200 Sobic003G334100--Sobic009G234200 Sobic003G094350 Sobic003G094350 Sobic001G500600--Sobic003G094350 Sobic004G336200 Sobic004G336200 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic003G070900 Sobic003G070900 Sobic001G500600--Sobic003G070900 Sobic003G141100 Sobic003G141100 Sobic001G500600--Sobic003G141100 Sobic001G500600--Sobic003G232700 Sobic003G287900 Sobic003G287900 Sobic001G500600--Sobic003G287900 Sobic002G133900 Sobic002G133900 Sobic001G500600--Sobic002G133900 Sobic001G500600--Sobic003G372900 Sobic010G183400--Sobic009G234200 Sobic004G250200 Sobic004G250200 Sobic010G183400--Sobic004G250200 Sobic010G183400--Sobic004G333400 Sobic003G245800 Sobic003G245800 Sobic010G183400--Sobic003G245800 Sobic010G183400--Sobic003G334100 Sobic003G330100 Sobic003G330100 Sobic010G183400--Sobic003G330100 Sobic010G183400--Sobic001G450600 Sobic003G439600 Sobic003G439600 Sobic010G183400--Sobic003G439600 Sobic005G028900 Sobic005G028900 Sobic010G183400--Sobic005G028900 Sobic006G214700 Sobic006G214700 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic008G063200 Sobic008G063200 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic001G450600--Sobic003G084500 Sobic001G450600--Sobic002G331800 Sobic003G286300 Sobic003G286300 Sobic001G450600--Sobic003G286300 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic002G181000--Sobic003G232700 Sobic002G181000--Sobic001G500600 Sobic002G043600 Sobic002G043600 Sobic002G181000--Sobic002G043600 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic001G495200 Sobic001G495200 Sobic002G181000--Sobic001G495200 Sobic003G352500 Sobic003G352500 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic001G001300 Sobic001G001300 Sobic006G280800--Sobic001G001300 Sobic006G280800--Sobic001G500600 Sobic006G280800--Sobic003G094350 Sobic006G280800--Sobic004G333400 Sobic006G280800--Sobic003G070900 Sobic006G280800--Sobic003G372900 Sobic006G280800--Sobic002G133900 Sobic008G006100 Sobic008G006100 Sobic006G280800--Sobic008G006100 Sobic001G134700 Sobic001G134700 Sobic006G280800--Sobic001G134700 Sobic003G372900--Sobic001G500600 Sobic003G372900--Sobic001G054100 Sobic001G083100 Sobic001G083100 Sobic003G372900--Sobic001G083100 Sobic002G406700 Sobic002G406700 Sobic003G372900--Sobic002G406700 Sobic003G372900--Sobic003G141100 Sobic003G372900--Sobic003G094350 Sobic003G372900--Sobic004G336200 Sobic003G372900--Sobic004G333400 Sobic003G372900--Sobic006G280800 Sobic003G232700--Sobic001G500600 Sobic003G232700--Sobic006G197300 Sobic003G232700--Sobic002G181000 Sobic003G232700--Sobic002G043600 Sobic003G232700--Sobic001G495200 Sobic003G232700--Sobic003G141100 Sobic003G232700--Sobic003G352500 Sobic004G238200 Sobic004G238200 Sobic003G232700--Sobic004G238200 Sobic003G301300 Sobic003G301300 Sobic003G232700--Sobic003G301300 Sobic006G106400 Sobic006G106400 Sobic001G283700--Sobic006G106400 Sobic009G175500 Sobic009G175500 Sobic001G283700--Sobic009G175500 Sobic001G126300 Sobic001G126300 Sobic001G283700--Sobic001G126300 Sobic001G283700--Sobic004G333400 Sobic004G012900 Sobic004G012900 Sobic001G283700--Sobic004G012900 Sobic001G128600 Sobic001G128600 Sobic001G283700--Sobic001G128600 Sobic004G165000 Sobic004G165000 Sobic001G283700--Sobic004G165000 Sobic002G112400 Sobic002G112400 Sobic001G283700--Sobic002G112400 Sobic005G110400 Sobic005G110400 Sobic001G283700--Sobic005G110400
Octagon: transcription factors


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