Gene annotation
Transcriptome id Sobic.002G331800.1
Synonym Sb02g035800
Functional annotation PPR repeat containing protein, expressed
UniProt C5XAV5
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF788
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42310 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os07g36390.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a048331
Brachypodium KQK16462
Barley HORVU1Hr1G092000.1 , HORVU1Hr1G092000.2 , HORVU2Hr1G043170.1 , HORVU2Hr1G043170.3 , HORVU2Hr1G043170.9 , HORVU2Hr1G043170.8 , HORVU2Hr1G043170.5 , HORVU2Hr1G043170.4 , HORVU2Hr1G043170.7 , HORVU2Hr1G043170.6 , HORVU2Hr1G043170.2 , HORVU2Hr1G043170.11 , HORVU2Hr1G043170.10
Wheat TraesCS2B02G238300 , TraesCS2A02G213508 , TraesCS2A02G213508
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
2 Sobic.006G214700 APO, putative, expressed -
3 Sobic.003G439600 amino acid kinase, putative, expressed K09903: uridylate kinase
4 Sobic.004G333400 COBW domain containing protein, putative, expressed -
5 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
6 Sobic.001G118400 expressed protein -
7 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC
8 Sobic.003G125900 DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed K02470: DNA gyrase subunit B
9 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
10 Sobic.003G334100 zinc finger family protein, putative, expressed -
11 Sobic.005G138600 - -
12 Sobic.006G193200 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
13 Sobic.010G056300 PPR repeat domain containing protein, putative, expressed -
14 Sobic.006G280800 expressed protein -
15 Sobic.010G197000 M16 domain containing zinc peptidase, putative, expressed -
16 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
17 Sobic.004G179200 expressed protein -
18 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
19 Sobic.001G535700 stress responsive A/B Barrel domain containing protein, expressed -
20 Sobic.006G155500 expressed protein -


Gene co-expression network
sample Sobic002G331800 Sobic002G331800 Sobic010G076800 Sobic010G076800 Sobic002G331800--Sobic010G076800 Sobic006G214700 Sobic006G214700 Sobic002G331800--Sobic006G214700 Sobic003G439600 Sobic003G439600 Sobic002G331800--Sobic003G439600 Sobic004G333400 Sobic004G333400 Sobic002G331800--Sobic004G333400 Sobic010G183400 Sobic010G183400 Sobic002G331800--Sobic010G183400 Sobic001G118400 Sobic001G118400 Sobic002G331800--Sobic001G118400 Sobic001G450600 Sobic001G450600 Sobic002G331800--Sobic001G450600 Sobic003G125900 Sobic003G125900 Sobic002G331800--Sobic003G125900 Sobic003G245800 Sobic003G245800 Sobic002G331800--Sobic003G245800 Sobic010G076800--Sobic002G331800 Sobic001G006000 Sobic001G006000 Sobic010G076800--Sobic001G006000 Sobic007G076900 Sobic007G076900 Sobic010G076800--Sobic007G076900 Sobic010G076800--Sobic006G214700 Sobic008G063200 Sobic008G063200 Sobic010G076800--Sobic008G063200 Sobic003G253300 Sobic003G253300 Sobic010G076800--Sobic003G253300 Sobic006G193200 Sobic006G193200 Sobic010G076800--Sobic006G193200 Sobic003G037300 Sobic003G037300 Sobic010G076800--Sobic003G037300 Sobic003G179400 Sobic003G179400 Sobic010G076800--Sobic003G179400 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G110900 Sobic006G110900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic006G214700--Sobic010G076800 Sobic003G439600--Sobic003G245800 Sobic003G439600--Sobic010G183400 Sobic003G439600--Sobic002G331800 Sobic003G439600--Sobic006G214700 Sobic003G439600--Sobic005G028900 Sobic002G163700 Sobic002G163700 Sobic003G439600--Sobic002G163700 Sobic006G197700 Sobic006G197700 Sobic003G439600--Sobic006G197700 Sobic003G439600--Sobic001G450600 Sobic003G286300 Sobic003G286300 Sobic003G439600--Sobic003G286300 Sobic003G334100 Sobic003G334100 Sobic004G333400--Sobic003G334100 Sobic001G500600 Sobic001G500600 Sobic004G333400--Sobic001G500600 Sobic004G333400--Sobic010G183400 Sobic004G333400--Sobic001G450600 Sobic002G181000 Sobic002G181000 Sobic004G333400--Sobic002G181000 Sobic006G280800 Sobic006G280800 Sobic004G333400--Sobic006G280800 Sobic003G372900 Sobic003G372900 Sobic004G333400--Sobic003G372900 Sobic003G232700 Sobic003G232700 Sobic004G333400--Sobic003G232700 Sobic001G283700 Sobic001G283700 Sobic004G333400--Sobic001G283700 Sobic009G234200 Sobic009G234200 Sobic010G183400--Sobic009G234200 Sobic004G250200 Sobic004G250200 Sobic010G183400--Sobic004G250200 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic010G183400--Sobic003G334100 Sobic003G330100 Sobic003G330100 Sobic010G183400--Sobic003G330100 Sobic010G183400--Sobic001G450600 Sobic010G183400--Sobic003G439600 Sobic010G183400--Sobic005G028900 Sobic006G155500 Sobic006G155500 Sobic001G118400--Sobic006G155500 Sobic003G070900 Sobic003G070900 Sobic001G118400--Sobic003G070900 Sobic003G328100 Sobic003G328100 Sobic001G118400--Sobic003G328100 Sobic004G165900 Sobic004G165900 Sobic001G118400--Sobic004G165900 Sobic001G286600 Sobic001G286600 Sobic001G118400--Sobic001G286600 Sobic002G061900 Sobic002G061900 Sobic001G118400--Sobic002G061900 Sobic010G056300 Sobic010G056300 Sobic001G118400--Sobic010G056300 Sobic004G252500 Sobic004G252500 Sobic001G118400--Sobic004G252500 Sobic006G140700 Sobic006G140700 Sobic001G118400--Sobic006G140700 Sobic001G450600--Sobic006G214700 Sobic001G450600--Sobic004G333400 Sobic001G450600--Sobic008G063200 Sobic001G450600--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic001G450600--Sobic003G084500 Sobic001G450600--Sobic002G331800 Sobic001G450600--Sobic003G286300 Sobic001G450600--Sobic003G334100 Sobic010G189200 Sobic010G189200 Sobic001G450600--Sobic010G189200 Sobic003G125900--Sobic002G331800 Sobic004G179400 Sobic004G179400 Sobic003G125900--Sobic004G179400 Sobic003G125900--Sobic003G070900 Sobic003G094350 Sobic003G094350 Sobic003G125900--Sobic003G094350 Sobic001G060500 Sobic001G060500 Sobic003G125900--Sobic001G060500 Sobic003G125900--Sobic001G118400 Sobic003G125900--Sobic004G252500 Sobic002G028400 Sobic002G028400 Sobic003G125900--Sobic002G028400 Sobic003G125900--Sobic001G500600 Sobic003G245800--Sobic006G197700 Sobic002G345200 Sobic002G345200 Sobic003G245800--Sobic002G345200 Sobic003G245800--Sobic004G250200 Sobic003G245800--Sobic010G183400 Sobic003G245800--Sobic003G439600 Sobic002G250100 Sobic002G250100 Sobic003G245800--Sobic002G250100 Sobic003G221700 Sobic003G221700 Sobic003G245800--Sobic003G221700 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100
Octagon: transcription factors


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