Gene annotation
Transcriptome id Sobic.010G002000.1
Synonym EDD, EDD1, Sb10g000400
Functional annotation glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed
UniProt C5Z231
Pfam PF02091 PF02092
Panther DB PTHR30075 PTHR30075:SF3
NCBI CDD -
KEGG Orthology K14164; glycyl-tRNA synthetase
Gene Ontology GO:0006426; glycyl-tRNA aminoacylation GO:0005737cytoplasm GO:0005524ATP binding GO:0004820glycine-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT3G48110 : glycine-tRNA ligases
RAP-DB (Rice) LOC_Os06g01400.1 : glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050345 , Zm00025a050336
Brachypodium KQK20082
Barley HORVU7Hr1G000550.26 , HORVU7Hr1G000550.27 , HORVU7Hr1G000550.24 , HORVU7Hr1G000550.25 , HORVU7Hr1G000550.22 , HORVU7Hr1G000550.23 , HORVU7Hr1G000550.20 , HORVU7Hr1G000550.21 , HORVU7Hr1G000550.15 , HORVU7Hr1G000550.7 , HORVU7Hr1G000550.8 , HORVU7Hr1G000550.16 , HORVU7Hr1G000550.4 , HORVU7Hr1G000550.3 , HORVU7Hr1G000550.2 , HORVU7Hr1G000550.1 , HORVU7Hr1G000550.17 , HORVU7Hr1G000550.14 , HORVU7Hr1G000550.13 , HORVU7Hr1G000550.12 , HORVU7Hr1G000550.11 , HORVU7Hr1G000550.10 , HORVU7Hr1G000550.19 , HORVU7Hr1G000550.18 , HORVU7Hr1G000550.9 , HORVU7Hr1G000550.6 , HORVU7Hr1G000550.5
Wheat TraesCS7A02G004000 , TraesCS7D02G004500 , TraesCS7D02G004500 , TraesCS7D02G007800 , TraesCS4A02G494400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G094350 - K01869: LARS, leucyl-tRNA synthetase
2 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
3 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
4 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
5 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
6 Sobic.009G148500 GTPase of unknown function domain containing protein, putative, expressed -
7 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
8 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
10 Sobic.002G406700 tyrosine-specific transport protein, putative, expressed K03834: tyrosine-specific transport protein
11 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
12 Sobic.006G280800 expressed protein -
13 Sobic.008G073100 uncharacterized protein ycf45, putative, expressed -
14 Sobic.003G372900 deoxynucleoside kinase family, putative, expressed -
15 Sobic.005G110400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
16 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
17 Sobic.001G134700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
18 Sobic.001G083100 Unnamed(PubMedID : 24676859)@WRKY4, expressed -
19 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.001G126300 adenylosuccinate synthetase, chloroplast precursor, putative, expressed K01939: purA, adenylosuccinate synthase


Gene co-expression network
sample Sobic010G002000 Sobic010G002000 Sobic003G094350 Sobic003G094350 Sobic010G002000--Sobic003G094350 Sobic008G039600 Sobic008G039600 Sobic010G002000--Sobic008G039600 Sobic001G054100 Sobic001G054100 Sobic010G002000--Sobic001G054100 Sobic001G500600 Sobic001G500600 Sobic010G002000--Sobic001G500600 Sobic002G401800 Sobic002G401800 Sobic010G002000--Sobic002G401800 Sobic009G148500 Sobic009G148500 Sobic010G002000--Sobic009G148500 Sobic005G143500 Sobic005G143500 Sobic010G002000--Sobic005G143500 Sobic004G336200 Sobic004G336200 Sobic010G002000--Sobic004G336200 Sobic003G141100 Sobic003G141100 Sobic010G002000--Sobic003G141100 Sobic002G133900 Sobic002G133900 Sobic003G094350--Sobic002G133900 Sobic003G070900 Sobic003G070900 Sobic003G094350--Sobic003G070900 Sobic003G094350--Sobic001G500600 Sobic003G287900 Sobic003G287900 Sobic003G094350--Sobic003G287900 Sobic005G100300 Sobic005G100300 Sobic003G094350--Sobic005G100300 Sobic002G028400 Sobic002G028400 Sobic003G094350--Sobic002G028400 Sobic003G094350--Sobic004G336200 Sobic003G094350--Sobic010G002000 Sobic004G353100 Sobic004G353100 Sobic003G094350--Sobic004G353100 Sobic008G039600--Sobic005G143500 Sobic001G083100 Sobic001G083100 Sobic008G039600--Sobic001G083100 Sobic006G106400 Sobic006G106400 Sobic008G039600--Sobic006G106400 Sobic008G039600--Sobic002G401800 Sobic002G272100 Sobic002G272100 Sobic008G039600--Sobic002G272100 Sobic008G039600--Sobic010G002000 Sobic001G368500 Sobic001G368500 Sobic008G039600--Sobic001G368500 Sobic008G039600--Sobic003G094350 Sobic002G181000 Sobic002G181000 Sobic008G039600--Sobic002G181000 Sobic001G028100 Sobic001G028100 Sobic001G054100--Sobic001G028100 Sobic003G372900 Sobic003G372900 Sobic001G054100--Sobic003G372900 Sobic001G054100--Sobic001G083100 Sobic001G054100--Sobic002G181000 Sobic001G054100--Sobic003G141100 Sobic001G054100--Sobic010G002000 Sobic007G185700 Sobic007G185700 Sobic001G054100--Sobic007G185700 Sobic001G037500 Sobic001G037500 Sobic001G054100--Sobic001G037500 Sobic004G328400 Sobic004G328400 Sobic001G054100--Sobic004G328400 Sobic001G500600--Sobic003G094350 Sobic001G500600--Sobic004G336200 Sobic006G197300 Sobic006G197300 Sobic001G500600--Sobic006G197300 Sobic001G500600--Sobic003G070900 Sobic001G500600--Sobic003G141100 Sobic003G232700 Sobic003G232700 Sobic001G500600--Sobic003G232700 Sobic001G500600--Sobic003G287900 Sobic001G500600--Sobic002G133900 Sobic001G500600--Sobic003G372900 Sobic002G401800--Sobic004G336200 Sobic008G073100 Sobic008G073100 Sobic002G401800--Sobic008G073100 Sobic002G405100 Sobic002G405100 Sobic002G401800--Sobic002G405100 Sobic004G012900 Sobic004G012900 Sobic002G401800--Sobic004G012900 Sobic002G401800--Sobic002G272100 Sobic005G110400 Sobic005G110400 Sobic002G401800--Sobic005G110400 Sobic002G401800--Sobic005G100300 Sobic002G401800--Sobic001G368500 Sobic003G077400 Sobic003G077400 Sobic002G401800--Sobic003G077400 Sobic009G148500--Sobic001G083100 Sobic003G151500 Sobic003G151500 Sobic009G148500--Sobic003G151500 Sobic009G148500--Sobic008G073100 Sobic006G055800 Sobic006G055800 Sobic009G148500--Sobic006G055800 Sobic001G126300 Sobic001G126300 Sobic009G148500--Sobic001G126300 Sobic004G011300 Sobic004G011300 Sobic009G148500--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic009G148500--Sobic005G002900 Sobic009G148500--Sobic005G110400 Sobic009G148500--Sobic001G500600 Sobic005G143500--Sobic005G110400 Sobic005G143500--Sobic008G039600 Sobic005G143500--Sobic001G368500 Sobic005G143500--Sobic002G401800 Sobic005G143500--Sobic006G106400 Sobic005G143500--Sobic002G272100 Sobic005G143500--Sobic008G073100 Sobic001G495200 Sobic001G495200 Sobic005G143500--Sobic001G495200 Sobic003G324700 Sobic003G324700 Sobic005G143500--Sobic003G324700 Sobic004G336200--Sobic002G401800 Sobic010G035400 Sobic010G035400 Sobic004G336200--Sobic010G035400 Sobic004G336200--Sobic001G500600 Sobic003G387100 Sobic003G387100 Sobic004G336200--Sobic003G387100 Sobic003G160800 Sobic003G160800 Sobic004G336200--Sobic003G160800 Sobic004G336200--Sobic008G073100 Sobic001G134700 Sobic001G134700 Sobic004G336200--Sobic001G134700 Sobic004G336200--Sobic005G110400 Sobic004G336200--Sobic006G197300 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G141100--Sobic003G372900 Sobic003G141100--Sobic001G054100 Sobic003G141100--Sobic009G148500 Sobic003G141100--Sobic003G160800 Sobic003G141100--Sobic005G002900
Octagon: transcription factors


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