Gene annotation
Transcriptome id Sobic.003G442700.4,Sobic.003G442700.7,Sobic.003G442700.5,Sobic.003G442700.1,Sobic.003G442700.3,Sobic.003G442700.2,Sobic.003G442700.6
Synonym Sb03g047240
Functional annotation -
UniProt A0A1B6Q8I2 , A0A1B6Q8G7 , A0A1W0W1I6 , A0A1B6Q8F9 , A0A1W0W1I9 , A0A1W0W1N4 , A0A1W0W1K1
Pfam PF00271 PF00270 PF04851 PF04851 PF00271 PF00270 PF00271
Panther DB PTHR24031 PTHR24031:SF228
NCBI CDD KOG0327; Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases KOG0330ATP-dependent RNA helicase
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0005524ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G19210 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g73900.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a039052
Brachypodium KQK11729
Barley HORVU3Hr1G114220.3 , HORVU3Hr1G114220.2 , HORVU3Hr1G114220.1 , HORVU3Hr1G114220.7 , HORVU3Hr1G114220.6 , HORVU3Hr1G114220.5 , HORVU3Hr1G114220.9 , HORVU3Hr1G114220.8 , HORVU3Hr1G114220.13 , HORVU3Hr1G114220.12 , HORVU3Hr1G114220.11 , HORVU3Hr1G114220.10 , HORVU3Hr1G114220.16 , HORVU3Hr1G114220.15 , HORVU3Hr1G114220.14
Wheat TraesCS3B02G592900 , TraesCS3B02G592900 , TraesCS3D02G530600 , TraesCS3D02G530600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
2 Sobic.004G235600 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
4 Sobic.003G332700 Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
5 Sobic.009G121000 expressed protein -
6 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
7 Sobic.001G060401 - -
8 Sobic.004G001300 -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15893: glycerate dehydrogenase
9 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
10 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
11 Sobic.003G003600 similar to Nodule inception protein-like(PubMedID : 29862293)@NIN, putative, expressed -
12 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
13 Sobic.001G065600 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
14 Sobic.001G530900 expressed protein -
15 Sobic.010G176550 - -
16 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
17 Sobic.002G359600 GA22009-PA, putative, expressed -
18 Sobic.003G161000 powdery mildew resistance protein PM3F, putative, expressed -
19 Sobic.005G111550 - -
20 Sobic.003G160800 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic003G442700 Sobic003G442700 Sobic001G465700 Sobic001G465700 Sobic003G442700--Sobic001G465700 Sobic004G235600 Sobic004G235600 Sobic003G442700--Sobic004G235600 Sobic008G001900 Sobic008G001900 Sobic003G442700--Sobic008G001900 Sobic003G332700 Sobic003G332700 Sobic003G442700--Sobic003G332700 Sobic009G121000 Sobic009G121000 Sobic003G442700--Sobic009G121000 Sobic002G042500 Sobic002G042500 Sobic003G442700--Sobic002G042500 Sobic001G060401 Sobic001G060401 Sobic003G442700--Sobic001G060401 Sobic004G001300 Sobic004G001300 Sobic003G442700--Sobic004G001300 Sobic001G073900 Sobic001G073900 Sobic003G442700--Sobic001G073900 Sobic006G038500 Sobic006G038500 Sobic001G465700--Sobic006G038500 Sobic010G043800 Sobic010G043800 Sobic001G465700--Sobic010G043800 Sobic005G111550 Sobic005G111550 Sobic001G465700--Sobic005G111550 Sobic001G465700--Sobic003G442700 Sobic001G465700--Sobic008G001900 Sobic004G294700 Sobic004G294700 Sobic001G465700--Sobic004G294700 Sobic001G530900 Sobic001G530900 Sobic001G465700--Sobic001G530900 Sobic004G298900 Sobic004G298900 Sobic001G465700--Sobic004G298900 Sobic006G031800 Sobic006G031800 Sobic001G465700--Sobic006G031800 Sobic004G235600--Sobic008G001900 Sobic004G235600--Sobic001G073900 Sobic004G235600--Sobic003G442700 Sobic004G235600--Sobic003G332700 Sobic003G085100 Sobic003G085100 Sobic004G235600--Sobic003G085100 Sobic005G001700 Sobic005G001700 Sobic004G235600--Sobic005G001700 Sobic002G314400 Sobic002G314400 Sobic004G235600--Sobic002G314400 Sobic004G235600--Sobic002G042500 Sobic004G235600--Sobic001G465700 Sobic008G001900--Sobic005G001700 Sobic008G001900--Sobic001G073900 Sobic008G001900--Sobic004G235600 Sobic008G001900--Sobic003G085100 Sobic008G001900--Sobic003G332700 Sobic004G054400 Sobic004G054400 Sobic008G001900--Sobic004G054400 Sobic005G063000 Sobic005G063000 Sobic008G001900--Sobic005G063000 Sobic005G204200 Sobic005G204200 Sobic008G001900--Sobic005G204200 Sobic008G001900--Sobic001G465700 Sobic003G332700--Sobic001G073900 Sobic003G332700--Sobic008G001900 Sobic008G117000 Sobic008G117000 Sobic003G332700--Sobic008G117000 Sobic003G332700--Sobic001G530900 Sobic003G332700--Sobic004G235600 Sobic001G531500 Sobic001G531500 Sobic003G332700--Sobic001G531500 Sobic003G332700--Sobic003G442700 Sobic010G085100 Sobic010G085100 Sobic003G332700--Sobic010G085100 Sobic005G118400 Sobic005G118400 Sobic003G332700--Sobic005G118400 Sobic009G121000--Sobic010G043800 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic009G121000--Sobic006G142600 Sobic003G160800 Sobic003G160800 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic007G103400 Sobic007G103400 Sobic009G121000--Sobic007G103400 Sobic010G002700 Sobic010G002700 Sobic009G121000--Sobic010G002700 Sobic001G037500 Sobic001G037500 Sobic002G042500--Sobic001G037500 Sobic003G150800 Sobic003G150800 Sobic002G042500--Sobic003G150800 Sobic002G042500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic002G042500--Sobic004G206200 Sobic002G042500--Sobic003G085100 Sobic003G141100 Sobic003G141100 Sobic002G042500--Sobic003G141100 Sobic002G296100 Sobic002G296100 Sobic002G042500--Sobic002G296100 Sobic007G185700 Sobic007G185700 Sobic002G042500--Sobic007G185700 Sobic001G126300 Sobic001G126300 Sobic002G042500--Sobic001G126300 Sobic001G060401--Sobic003G442700 Sobic001G060401--Sobic004G001300 Sobic002G358500 Sobic002G358500 Sobic001G060401--Sobic002G358500 Sobic002G347600 Sobic002G347600 Sobic001G060401--Sobic002G347600 Sobic002G000700 Sobic002G000700 Sobic001G060401--Sobic002G000700 Sobic001G098301 Sobic001G098301 Sobic001G060401--Sobic001G098301 Sobic009G191100 Sobic009G191100 Sobic001G060401--Sobic009G191100 Sobic001G048400 Sobic001G048400 Sobic001G060401--Sobic001G048400 Sobic001G468700 Sobic001G468700 Sobic001G060401--Sobic001G468700 Sobic001G118100 Sobic001G118100 Sobic004G001300--Sobic001G118100 Sobic007G204900 Sobic007G204900 Sobic004G001300--Sobic007G204900 Sobic008G001000 Sobic008G001000 Sobic004G001300--Sobic008G001000 Sobic004G001300--Sobic003G442700 Sobic003G161000 Sobic003G161000 Sobic004G001300--Sobic003G161000 Sobic004G001300--Sobic001G098301 Sobic003G003600 Sobic003G003600 Sobic004G001300--Sobic003G003600 Sobic003G137100 Sobic003G137100 Sobic004G001300--Sobic003G137100 Sobic004G001300--Sobic001G060401 Sobic001G073900--Sobic003G332700 Sobic001G073900--Sobic008G001900 Sobic001G073900--Sobic008G117000 Sobic003G342100 Sobic003G342100 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G073900--Sobic001G531500 Sobic001G073900--Sobic005G001700 Sobic001G073900--Sobic004G235600 Sobic002G049600 Sobic002G049600 Sobic001G073900--Sobic002G049600
Octagon: transcription factors


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