Gene annotation
| Transcriptome id | Sobic.003G332700.4,Sobic.003G332700.1,Sobic.003G332700.3,Sobic.003G332700.2,Sobic.003G332700.5 |
|---|---|
| Synonym | BGLU11, Sb03g037780 |
| Functional annotation | Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed |
| UniProt | A0A1B6Q6P5 , A0A1B6Q6Q3 , A0A1W0W019 , A0A1B6Q6P8 , A0A1W0W040 |
| Pfam | PF00232 |
| Panther DB | PTHR10353 PTHR10353:SF29 |
| NCBI CDD | KOG0626; Beta-glucosidase, lactase phlorizinhydrolase, and related proteins |
| KEGG Orthology | K01188; beta-glucosidase |
| Gene Ontology | GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds |
Orthologs (automatic annotation)
| TAIR | AT1G02850 : beta glucosidase 10,beta glucosidase 11 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g70520.1,LOC_Os05g30350.1 : Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed,Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed |
| MaizeGDB (Corn) | Zm00025a027121 |
| Brachypodium | KQJ99857 |
| Barley | HORVU3Hr1G097010.14 , HORVU3Hr1G097010.15 , HORVU3Hr1G097010.16 , HORVU3Hr1G097010.10 , HORVU3Hr1G097010.11 , HORVU3Hr1G097010.12 , HORVU3Hr1G097010.18 , HORVU3Hr1G097010.19 , HORVU3Hr1G097010.21 , HORVU3Hr1G097010.22 , HORVU3Hr1G097010.17 , HORVU3Hr1G097010.8 , HORVU3Hr1G097010.9 , HORVU3Hr1G097010.6 , HORVU3Hr1G097010.4 , HORVU3Hr1G097010.5 , HORVU3Hr1G097010.2 , HORVU3Hr1G097010.3 |
| Wheat | TraesCS2D02G095600 , TraesCS3D02G440600 , TraesCS3A02G337600 , TraesCS3B02G484200 , TraesCS3B02G484200 |
| Populus | - |
JBrowse
| Sobic.003G332700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G073900 | lactate/malate dehydrogenase, putative, expressed | K00026: malate dehydrogenase |
| 2 | Sobic.008G001900 | mitochondrial substrate carrier family protein, putative, expressed | - |
| 3 | Sobic.008G117000 | expressed protein | K13457: RPM1, disease resistance protein RPM1 |
| 4 | Sobic.001G530900 | expressed protein | - |
| 5 | Sobic.004G235600 | mTERF family protein, expressed | K15032: mTERF domain-containing protein, mitochondrial |
| 6 | Sobic.001G531500 | peroxisomal biogenesis factor 11, putative, expressed | - |
| 7 | Sobic.003G442700 | - | - |
| 8 | Sobic.010G085100 | geminivirus Rep-interacting motor protein, putative, expressed | - |
| 9 | Sobic.005G118400 | expressed protein | - |
| 10 | Sobic.003G036200 | NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 11 | Sobic.001G468700 | expressed protein | - |
| 12 | Sobic.005G001700 | mitochondrial substrate carrier family protein, putative, expressed | - |
| 13 | Sobic.001G097100 | -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed | K00600: glyA, glycine hydroxymethyltransferase |
| 14 | Sobic.010G205100 | Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed | K00696: sucrose-phosphate synthase |
| 15 | Sobic.003G342100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed | - |
| 16 | Sobic.006G064100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | - |
| 17 | Sobic.002G314400 | peptidase, M24 family protein, putative, expressed | K01265: methionyl aminopeptidase |
| 18 | Sobic.002G049600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 19 | Sobic.005G063000 | short chain dehydrogenase/reductase protein, putative, expressed | - |
| 20 | Sobic.009G121000 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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