Gene annotation
| Transcriptome id | Sobic.008G117000.11,Sobic.008G117000.10,Sobic.008G117000.14,Sobic.008G117000.15,Sobic.008G117000.3,Sobic.008G117000.12,Sobic.008G117000.7,Sobic.008G117000.13,Sobic.008G117000.5,Sobic.008G117000.6,Sobic.008G117000.8,Sobic.008G117000.9,Sobic.008G117000.4,Sobic.008G117000.2 |
|---|---|
| Synonym | Sb08g017060, RPS3, RPM1 |
| Functional annotation | expressed protein |
| UniProt | C5YPC5 |
| Pfam | PF00931 |
| Panther DB | PTHR23155 PTHR23155:SF621 |
| NCBI CDD | KOG4658; Apoptotic ATPase |
| KEGG Orthology | K13457; RPM1, disease resistance protein RPM1 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G07040 : NB-ARC domain-containing disease resistance protein |
|---|---|
| RAP-DB (Rice) | ChrUn.fgenesh.mRNA.29 : expressed protein |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G324500 | PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed | K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase |
| 2 | Sobic.001G073900 | lactate/malate dehydrogenase, putative, expressed | K00026: malate dehydrogenase |
| 3 | Sobic.003G036200 | NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 4 | Sobic.001G134100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed | - |
| 5 | Sobic.004G215800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed | K04354: serine/threonine-protein phosphatase 2A regulatory subunit B |
| 6 | Sobic.003G367500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 7 | Sobic.007G105500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed | - |
| 8 | Sobic.003G332700 | Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed | K01188: beta-glucosidase |
| 9 | Sobic.003G185900 | protein phosphatase 2C, putative, expressed | - |
| 10 | Sobic.010G085100 | geminivirus Rep-interacting motor protein, putative, expressed | - |
| 11 | Sobic.004G154200 | expressed protein | - |
| 12 | Sobic.007G009200 | adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed | K00939: adk, adenylate kinase |
| 13 | Sobic.008G033200 | stem-specific protein TSJT1, putative, expressed | - |
| 14 | Sobic.005G231500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed | - |
| 15 | Sobic.009G242100 | chloroplast unusual positioning protein, putative, expressed | - |
| 16 | Sobic.010G067100 | glutathione peroxidase, putative, expressed | K00432: gpx, btuE, glutathione peroxidase |
| 17 | Sobic.005G001700 | mitochondrial substrate carrier family protein, putative, expressed | - |
| 18 | Sobic.003G398800 | expressed protein | - |
| 19 | Sobic.003G024300 | glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed | K05941: glutathione gamma-glutamylcysteinyltransferase |
| 20 | Sobic.002G049600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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