Gene annotation
Transcriptome id Sobic.005G231500.1
Synonym RCA, Sb05g027870
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
AAA-type ATPase family protein, putative, expressed
UniProt C5Y1T5
Pfam PF00004
Panther DB PTHR32429 PTHR32429:SF8
NCBI CDD KOG0651; 26S proteasome regulatory complex, ATPase RPT4
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G39730 : rubisco activase
RAP-DB (Rice) LOC_Os11g47970.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a029069 , Zm00025a029070
Brachypodium PNT62864 , KQJ87037 , KQJ87034 , KQJ87035 , KQJ87036
Barley HORVU4Hr1G027260.6 , HORVU4Hr1G027260.5 , HORVU4Hr1G027260.3 , HORVU4Hr1G027260.2 , HORVU4Hr1G027260.20 , HORVU4Hr1G027260.11 , HORVU4Hr1G027260.10 , HORVU4Hr1G027260.13 , HORVU4Hr1G027260.12 , HORVU4Hr1G027260.15 , HORVU4Hr1G027260.14 , HORVU4Hr1G027260.17 , HORVU4Hr1G027260.16 , HORVU4Hr1G027260.19 , HORVU4Hr1G027260.18 , HORVU4Hr1G027260.7 , HORVU4Hr1G027260.1 , HORVU4Hr1G027260.4 , HORVU4Hr1G027260.9 , HORVU4Hr1G027260.8
Wheat TraesCS4A02G177600 , TraesCS4D02G134900 , TraesCS4B02G140300 , TraesCS4B02G140300 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4B02G140200 , TraesCS4B02G140200 , TraesCS4A02G177500 , TraesCS4A02G177500
Populus -


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cDNA sequences
Sobic.005G231500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
2 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
3 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
4 Sobic.004G154200 expressed protein -
5 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
7 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
8 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
10 Sobic.009G015100 ACT domain containing protein, expressed -
11 Sobic.005G089600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
12 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
13 Sobic.003G372400 amidophosphoribosyltransferase, chloroplast precursor, putative, expressed K00764: purF, amidophosphoribosyltransferase
14 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
15 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
16 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
17 Sobic.007G142200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
18 Sobic.008G117000 expressed protein K13457: RPM1, disease resistance protein RPM1
19 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
20 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase


Gene co-expression network
sample Sobic005G231500 Sobic005G231500 Sobic003G367500 Sobic003G367500 Sobic005G231500--Sobic003G367500 Sobic010G251700 Sobic010G251700 Sobic005G231500--Sobic010G251700 Sobic005G206300 Sobic005G206300 Sobic005G231500--Sobic005G206300 Sobic004G154200 Sobic004G154200 Sobic005G231500--Sobic004G154200 Sobic007G105500 Sobic007G105500 Sobic005G231500--Sobic007G105500 Sobic001G329400 Sobic001G329400 Sobic005G231500--Sobic001G329400 Sobic001G134100 Sobic001G134100 Sobic005G231500--Sobic001G134100 Sobic004G356400 Sobic004G356400 Sobic005G231500--Sobic004G356400 Sobic004G215800 Sobic004G215800 Sobic005G231500--Sobic004G215800 Sobic003G367500--Sobic004G215800 Sobic003G367500--Sobic007G105500 Sobic003G398800 Sobic003G398800 Sobic003G367500--Sobic003G398800 Sobic003G367500--Sobic004G154200 Sobic010G039500 Sobic010G039500 Sobic003G367500--Sobic010G039500 Sobic002G324500 Sobic002G324500 Sobic003G367500--Sobic002G324500 Sobic003G127800 Sobic003G127800 Sobic003G367500--Sobic003G127800 Sobic004G059800 Sobic004G059800 Sobic003G367500--Sobic004G059800 Sobic005G089600 Sobic005G089600 Sobic003G367500--Sobic005G089600 Sobic004G027600 Sobic004G027600 Sobic010G251700--Sobic004G027600 Sobic010G251700--Sobic005G231500 Sobic004G112100 Sobic004G112100 Sobic010G251700--Sobic004G112100 Sobic010G251700--Sobic004G356400 Sobic001G446100 Sobic001G446100 Sobic010G251700--Sobic001G446100 Sobic004G189800 Sobic004G189800 Sobic010G251700--Sobic004G189800 Sobic003G021100 Sobic003G021100 Sobic010G251700--Sobic003G021100 Sobic010G251700--Sobic001G329400 Sobic007G142200 Sobic007G142200 Sobic010G251700--Sobic007G142200 Sobic005G206300--Sobic005G231500 Sobic005G206300--Sobic004G356400 Sobic001G017300 Sobic001G017300 Sobic005G206300--Sobic001G017300 Sobic003G391200 Sobic003G391200 Sobic005G206300--Sobic003G391200 Sobic005G101200 Sobic005G101200 Sobic005G206300--Sobic005G101200 Sobic009G015100 Sobic009G015100 Sobic005G206300--Sobic009G015100 Sobic005G206300--Sobic004G154200 Sobic010G249700 Sobic010G249700 Sobic005G206300--Sobic010G249700 Sobic003G313300 Sobic003G313300 Sobic005G206300--Sobic003G313300 Sobic004G154200--Sobic003G367500 Sobic003G185900 Sobic003G185900 Sobic004G154200--Sobic003G185900 Sobic004G154200--Sobic003G398800 Sobic004G154200--Sobic007G105500 Sobic010G067100 Sobic010G067100 Sobic004G154200--Sobic010G067100 Sobic004G154200--Sobic005G231500 Sobic010G085100 Sobic010G085100 Sobic004G154200--Sobic010G085100 Sobic004G154200--Sobic003G127800 Sobic004G154200--Sobic001G329400 Sobic007G105500--Sobic004G215800 Sobic003G036200 Sobic003G036200 Sobic007G105500--Sobic003G036200 Sobic002G404800 Sobic002G404800 Sobic007G105500--Sobic002G404800 Sobic007G105500--Sobic003G185900 Sobic007G105500--Sobic003G367500 Sobic007G105500--Sobic005G101200 Sobic009G256100 Sobic009G256100 Sobic007G105500--Sobic009G256100 Sobic008G033000 Sobic008G033000 Sobic007G105500--Sobic008G033000 Sobic007G105500--Sobic010G085100 Sobic003G024300 Sobic003G024300 Sobic001G329400--Sobic003G024300 Sobic007G161500 Sobic007G161500 Sobic001G329400--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic001G329400--Sobic006G244000 Sobic001G329400--Sobic003G127800 Sobic009G129300 Sobic009G129300 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic004G283100 Sobic004G283100 Sobic001G329400--Sobic004G283100 Sobic001G491000 Sobic001G491000 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic001G134100--Sobic003G367500 Sobic001G134100--Sobic001G329400 Sobic001G134100--Sobic005G231500 Sobic001G134100--Sobic007G105500 Sobic001G134100--Sobic004G154200 Sobic001G134100--Sobic010G085100 Sobic008G117000 Sobic008G117000 Sobic001G134100--Sobic008G117000 Sobic001G134100--Sobic010G039500 Sobic001G134100--Sobic004G215800 Sobic004G356400--Sobic001G017300 Sobic004G356400--Sobic005G101200 Sobic006G158100 Sobic006G158100 Sobic004G356400--Sobic006G158100 Sobic004G356400--Sobic003G185900 Sobic004G356400--Sobic007G105500 Sobic001G303200 Sobic001G303200 Sobic004G356400--Sobic001G303200 Sobic009G237100 Sobic009G237100 Sobic004G356400--Sobic009G237100 Sobic004G356400--Sobic004G189800 Sobic001G258200 Sobic001G258200 Sobic004G356400--Sobic001G258200 Sobic004G215800--Sobic007G105500 Sobic004G215800--Sobic003G036200 Sobic004G215800--Sobic003G185900 Sobic004G215800--Sobic003G367500 Sobic004G215800--Sobic002G404800 Sobic004G215800--Sobic008G033000 Sobic004G215800--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G215800--Sobic003G097600 Sobic004G215800--Sobic004G112100
Octagon: transcription factors


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