Gene annotation
Transcriptome id Sobic.004G112100.2,Sobic.004G112100.1
Synonym Sb04g009170,
Functional annotation - (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsRhmbd6 - Putative Rhomboid homologue, expressed
UniProt A0A194YP18 , A0A194YP14
Pfam PF01694
Panther DB PTHR22936 PTHR22936:SF4
NCBI CDD KOG2289; Rhomboid family proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G38510 : Rhomboid-related intramembrane serine protease family protein
RAP-DB (Rice) LOC_Os02g22100.1 : OsRhmbd6 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a034438
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
2 Sobic.009G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
3 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
4 Sobic.004G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
5 Sobic.009G256100 expressed protein -
6 Sobic.003G097600 - -
7 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
8 Sobic.007G006400 - -
9 Sobic.004G027600 expressed protein -
10 Sobic.004G059800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT1@3 - Na+ transporter, expressed -
11 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
13 Sobic.001G446100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
15 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
18 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
19 Sobic.004G082300 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.008G140200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G112100 Sobic004G112100 Sobic006G153400 Sobic006G153400 Sobic004G112100--Sobic006G153400 Sobic009G048900 Sobic009G048900 Sobic004G112100--Sobic009G048900 Sobic010G104800 Sobic010G104800 Sobic004G112100--Sobic010G104800 Sobic004G215800 Sobic004G215800 Sobic004G112100--Sobic004G215800 Sobic009G256100 Sobic009G256100 Sobic004G112100--Sobic009G256100 Sobic003G097600 Sobic003G097600 Sobic004G112100--Sobic003G097600 Sobic002G404800 Sobic002G404800 Sobic004G112100--Sobic002G404800 Sobic007G006400 Sobic007G006400 Sobic004G112100--Sobic007G006400 Sobic004G027600 Sobic004G027600 Sobic004G112100--Sobic004G027600 Sobic006G153400--Sobic010G104800 Sobic006G153400--Sobic009G256100 Sobic006G153400--Sobic007G006400 Sobic006G153400--Sobic004G112100 Sobic003G127800 Sobic003G127800 Sobic006G153400--Sobic003G127800 Sobic001G244600 Sobic001G244600 Sobic006G153400--Sobic001G244600 Sobic004G082300 Sobic004G082300 Sobic006G153400--Sobic004G082300 Sobic004G059800 Sobic004G059800 Sobic006G153400--Sobic004G059800 Sobic005G101200 Sobic005G101200 Sobic006G153400--Sobic005G101200 Sobic009G048900--Sobic004G112100 Sobic006G244000 Sobic006G244000 Sobic009G048900--Sobic006G244000 Sobic009G048900--Sobic006G153400 Sobic009G048900--Sobic010G104800 Sobic006G057866 Sobic006G057866 Sobic009G048900--Sobic006G057866 Sobic001G446100 Sobic001G446100 Sobic009G048900--Sobic001G446100 Sobic009G048900--Sobic003G127800 Sobic009G048900--Sobic004G215800 Sobic001G540300 Sobic001G540300 Sobic009G048900--Sobic001G540300 Sobic001G073300 Sobic001G073300 Sobic010G104800--Sobic001G073300 Sobic010G104800--Sobic006G153400 Sobic010G104800--Sobic009G256100 Sobic010G104800--Sobic007G006400 Sobic008G129900 Sobic008G129900 Sobic010G104800--Sobic008G129900 Sobic010G104800--Sobic004G112100 Sobic010G104800--Sobic001G244600 Sobic006G161500 Sobic006G161500 Sobic010G104800--Sobic006G161500 Sobic002G390100 Sobic002G390100 Sobic010G104800--Sobic002G390100 Sobic007G105500 Sobic007G105500 Sobic004G215800--Sobic007G105500 Sobic003G036200 Sobic003G036200 Sobic004G215800--Sobic003G036200 Sobic003G185900 Sobic003G185900 Sobic004G215800--Sobic003G185900 Sobic003G367500 Sobic003G367500 Sobic004G215800--Sobic003G367500 Sobic004G215800--Sobic002G404800 Sobic008G033000 Sobic008G033000 Sobic004G215800--Sobic008G033000 Sobic004G215800--Sobic009G256100 Sobic004G215800--Sobic003G097600 Sobic004G215800--Sobic004G112100 Sobic009G256100--Sobic010G104800 Sobic009G256100--Sobic006G153400 Sobic009G256100--Sobic002G390100 Sobic007G058100 Sobic007G058100 Sobic009G256100--Sobic007G058100 Sobic009G256100--Sobic007G105500 Sobic009G256100--Sobic002G404800 Sobic009G256100--Sobic003G185900 Sobic009G256100--Sobic004G215800 Sobic009G256100--Sobic008G129900 Sobic003G097600--Sobic008G129900 Sobic003G097600--Sobic007G006400 Sobic003G097600--Sobic004G215800 Sobic003G097600--Sobic003G185900 Sobic003G097600--Sobic008G033000 Sobic003G097600--Sobic004G112100 Sobic003G097600--Sobic004G082300 Sobic009G038701 Sobic009G038701 Sobic003G097600--Sobic009G038701 Sobic001G258200 Sobic001G258200 Sobic003G097600--Sobic001G258200 Sobic002G404800--Sobic007G105500 Sobic002G404800--Sobic003G036200 Sobic002G404800--Sobic004G215800 Sobic002G404800--Sobic005G101200 Sobic002G404800--Sobic002G390100 Sobic002G404800--Sobic009G256100 Sobic002G404800--Sobic003G185900 Sobic002G404800--Sobic008G033000 Sobic002G404800--Sobic004G112100 Sobic007G006400--Sobic003G097600 Sobic007G006400--Sobic010G104800 Sobic007G006400--Sobic006G153400 Sobic007G006400--Sobic008G129900 Sobic007G006400--Sobic004G112100 Sobic007G006400--Sobic004G082300 Sobic007G006400--Sobic009G256100 Sobic007G006400--Sobic004G059800 Sobic007G006400--Sobic003G127800 Sobic004G189800 Sobic004G189800 Sobic004G027600--Sobic004G189800 Sobic004G027600--Sobic003G185900 Sobic010G251700 Sobic010G251700 Sobic004G027600--Sobic010G251700 Sobic004G027600--Sobic004G112100 Sobic009G237100 Sobic009G237100 Sobic004G027600--Sobic009G237100 Sobic010G067100 Sobic010G067100 Sobic004G027600--Sobic010G067100 Sobic010G085100 Sobic010G085100 Sobic004G027600--Sobic010G085100 Sobic004G027600--Sobic001G258200 Sobic004G027600--Sobic005G101200
Octagon: transcription factors


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