Gene annotation
Transcriptome id Sobic.008G129900.1
Synonym RTS3, IREG3, MAR1, Sb08g018220, ATIREG3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5YPT1
Pfam PF06963
Panther DB PTHR11660 PTHR11660:SF53
NCBI CDD KOG2601; Iron transporter
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0005381iron ion transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT5G26820 : iron-regulated protein 3
RAP-DB (Rice) LOC_Os12g37530.1 : expressed protein
MaizeGDB (Corn) Zm00025a004147
Brachypodium KQJ86322
Barley HORVU5Hr1G022760.8 , HORVU5Hr1G022760.9 , HORVU5Hr1G022760.2 , HORVU5Hr1G022760.3 , HORVU5Hr1G022760.1 , HORVU5Hr1G022760.6 , HORVU5Hr1G022760.7 , HORVU5Hr1G022760.4 , HORVU5Hr1G022760.5 , HORVU5Hr1G022760.18 , HORVU5Hr1G022760.19 , HORVU5Hr1G022760.10 , HORVU5Hr1G022760.11 , HORVU5Hr1G022760.12 , HORVU5Hr1G022760.13 , HORVU5Hr1G022760.14 , HORVU5Hr1G022760.15 , HORVU5Hr1G022760.16 , HORVU5Hr1G022760.17 , HORVU5Hr1G022760.20
Wheat TraesCS5B02G093600 , TraesCS5B02G093600 , TraesCS5B02G093600 , TraesCS5A02G087700 , TraesCS5D02G098400
Populus -


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cDNA sequences
Sobic.008G129900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
2 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
3 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
4 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
5 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.003G097600 - -
7 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
9 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
11 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
12 Sobic.007G006400 - -
13 Sobic.009G038701 - -
14 Sobic.009G256100 expressed protein -
15 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
16 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
17 Sobic.003G409700 rieske domain containing protein, expressed -
18 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
19 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
20 Sobic.003G185900 protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic008G129900 Sobic008G129900 Sobic010G231300 Sobic010G231300 Sobic008G129900--Sobic010G231300 Sobic008G033000 Sobic008G033000 Sobic008G129900--Sobic008G033000 Sobic001G258200 Sobic001G258200 Sobic008G129900--Sobic001G258200 Sobic001G217900 Sobic001G217900 Sobic008G129900--Sobic001G217900 Sobic006G235400 Sobic006G235400 Sobic008G129900--Sobic006G235400 Sobic003G097600 Sobic003G097600 Sobic008G129900--Sobic003G097600 Sobic001G263100 Sobic001G263100 Sobic008G129900--Sobic001G263100 Sobic002G206300 Sobic002G206300 Sobic008G129900--Sobic002G206300 Sobic003G341300 Sobic003G341300 Sobic008G129900--Sobic003G341300 Sobic010G231300--Sobic008G129900 Sobic010G231300--Sobic006G235400 Sobic010G231300--Sobic001G217900 Sobic010G231300--Sobic001G263100 Sobic006G161500 Sobic006G161500 Sobic010G231300--Sobic006G161500 Sobic007G133000 Sobic007G133000 Sobic010G231300--Sobic007G133000 Sobic010G231300--Sobic003G341300 Sobic001G180200 Sobic001G180200 Sobic010G231300--Sobic001G180200 Sobic002G162400 Sobic002G162400 Sobic010G231300--Sobic002G162400 Sobic003G185900 Sobic003G185900 Sobic008G033000--Sobic003G185900 Sobic008G033000--Sobic008G129900 Sobic008G033000--Sobic001G258200 Sobic001G504400 Sobic001G504400 Sobic008G033000--Sobic001G504400 Sobic008G033000--Sobic001G217900 Sobic010G125833 Sobic010G125833 Sobic008G033000--Sobic010G125833 Sobic008G033000--Sobic002G206300 Sobic004G215800 Sobic004G215800 Sobic008G033000--Sobic004G215800 Sobic009G038701 Sobic009G038701 Sobic008G033000--Sobic009G038701 Sobic001G258200--Sobic003G185900 Sobic002G382700 Sobic002G382700 Sobic001G258200--Sobic002G382700 Sobic001G258200--Sobic008G129900 Sobic001G258200--Sobic001G504400 Sobic004G189800 Sobic004G189800 Sobic001G258200--Sobic004G189800 Sobic001G258200--Sobic008G033000 Sobic001G258200--Sobic002G206300 Sobic001G359300 Sobic001G359300 Sobic001G258200--Sobic001G359300 Sobic005G068700 Sobic005G068700 Sobic001G258200--Sobic005G068700 Sobic007G058100 Sobic007G058100 Sobic001G217900--Sobic007G058100 Sobic001G217900--Sobic010G231300 Sobic001G217900--Sobic008G129900 Sobic001G378100 Sobic001G378100 Sobic001G217900--Sobic001G378100 Sobic001G217900--Sobic001G258200 Sobic001G217900--Sobic002G206300 Sobic001G217900--Sobic001G263100 Sobic001G217900--Sobic008G033000 Sobic001G540600 Sobic001G540600 Sobic001G217900--Sobic001G540600 Sobic006G235400--Sobic010G231300 Sobic001G077300 Sobic001G077300 Sobic006G235400--Sobic001G077300 Sobic004G128900 Sobic004G128900 Sobic006G235400--Sobic004G128900 Sobic006G235400--Sobic003G341300 Sobic003G409700 Sobic003G409700 Sobic006G235400--Sobic003G409700 Sobic006G235400--Sobic008G129900 Sobic006G235400--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic006G235400--Sobic003G380200 Sobic006G235400--Sobic001G180200 Sobic003G097600--Sobic008G129900 Sobic007G006400 Sobic007G006400 Sobic003G097600--Sobic007G006400 Sobic003G097600--Sobic004G215800 Sobic003G097600--Sobic003G185900 Sobic003G097600--Sobic008G033000 Sobic004G112100 Sobic004G112100 Sobic003G097600--Sobic004G112100 Sobic004G082300 Sobic004G082300 Sobic003G097600--Sobic004G082300 Sobic003G097600--Sobic009G038701 Sobic003G097600--Sobic001G258200 Sobic001G263100--Sobic007G058100 Sobic001G263100--Sobic010G231300 Sobic001G263100--Sobic008G129900 Sobic001G263100--Sobic002G162400 Sobic001G263100--Sobic001G180200 Sobic001G263100--Sobic001G217900 Sobic001G263100--Sobic003G341300 Sobic001G263100--Sobic002G206300 Sobic001G263100--Sobic006G235400 Sobic002G206300--Sobic009G038701 Sobic002G206300--Sobic001G504400 Sobic002G206300--Sobic001G180200 Sobic001G536700 Sobic001G536700 Sobic002G206300--Sobic001G536700 Sobic009G207900 Sobic009G207900 Sobic002G206300--Sobic009G207900 Sobic002G206300--Sobic001G258200 Sobic002G206300--Sobic008G129900 Sobic002G206300--Sobic001G217900 Sobic002G206300--Sobic003G341300 Sobic003G341300--Sobic001G180200 Sobic007G157300 Sobic007G157300 Sobic003G341300--Sobic007G157300 Sobic001G283100 Sobic001G283100 Sobic003G341300--Sobic001G283100 Sobic003G341300--Sobic003G409700 Sobic003G341300--Sobic006G235400 Sobic003G341300--Sobic002G162400 Sobic003G341300--Sobic001G077300 Sobic006G090100 Sobic006G090100 Sobic003G341300--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic003G341300--Sobic003G094100
Octagon: transcription factors


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