Gene annotation
Transcriptome id Sobic.010G231300.3,Sobic.010G231300.1,Sobic.010G231300.2
Synonym GLUR3, Sb10g027390, ATGLR3.4, GLR3.4
Functional annotation glutamate receptor, putative, expressed
UniProt A0A1W0VUC8 , A0A194YKY8
Pfam PF00497 PF13458 PF00060
Panther DB PTHR18966 PTHR18966:SF250
NCBI CDD KOG1052; Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits
KEGG Orthology K05387; glutamate receptor, ionotropic, plant
Gene Ontology GO:0016020; membrane GO:0004970ionotropic glutamate receptor activity


Orthologs (automatic annotation)
TAIR AT1G05200 : glutamate receptor 3.4
RAP-DB (Rice) LOC_Os06g46670.2 : glutamate receptor, putative, expressed
MaizeGDB (Corn) Zm00025a018130 , Zm00025a018125 , Zm00025a018121
Brachypodium KQK17166 , KQK17165
Barley HORVU1Hr1G086120.10 , HORVU1Hr1G086120.11 , HORVU1Hr1G086120.12 , HORVU1Hr1G086120.13 , HORVU1Hr1G086120.14 , HORVU1Hr1G086120.15 , HORVU1Hr1G086120.16 , HORVU1Hr1G086120.17 , HORVU1Hr1G086120.18 , HORVU1Hr1G086120.19 , HORVU7Hr1G104490.5 , HORVU7Hr1G104490.4 , HORVU7Hr1G104490.7 , HORVU7Hr1G104490.6 , HORVU7Hr1G104490.3 , HORVU7Hr1G104490.2 , HORVU7Hr1G104490.8 , HORVU1Hr1G086120.2 , HORVU1Hr1G086120.3 , HORVU1Hr1G086120.1 , HORVU1Hr1G086120.6 , HORVU1Hr1G086120.7 , HORVU1Hr1G086120.4 , HORVU1Hr1G086120.5 , HORVU1Hr1G086120.8 , HORVU1Hr1G086120.9 , HORVU1Hr1G086120.25 , HORVU1Hr1G086120.24 , HORVU1Hr1G086120.21 , HORVU1Hr1G086120.20 , HORVU1Hr1G086120.23 , HORVU1Hr1G086120.22
Wheat TraesCS7B02G355500 , TraesCS1A02G390300 , TraesCS1A02G390300 , TraesCS2D02G265700 , TraesCS2D02G265700 , TraesCS2A02G257200 , TraesCS7A02G455200 , TraesCS7D02G444100 , TraesCS7D02G444100 , TraesCS2B02G285400 , TraesCS2B02G285400 , TraesCS1B02G418500 , TraesCS1B02G418500 , TraesCS1D02G398500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
3 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
4 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
5 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
6 Sobic.007G133000 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
7 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
9 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
10 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
11 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
13 Sobic.003G409700 rieske domain containing protein, expressed -
14 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
15 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
16 Sobic.001G077300 thioredoxin, putative, expressed -
17 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
18 Sobic.001G540600 expressed protein -
19 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
20 Sobic.004G143300 high mobility group, putative, expressed -


Gene co-expression network
sample Sobic010G231300 Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic010G231300--Sobic008G129900 Sobic006G235400 Sobic006G235400 Sobic010G231300--Sobic006G235400 Sobic001G217900 Sobic001G217900 Sobic010G231300--Sobic001G217900 Sobic001G263100 Sobic001G263100 Sobic010G231300--Sobic001G263100 Sobic006G161500 Sobic006G161500 Sobic010G231300--Sobic006G161500 Sobic007G133000 Sobic007G133000 Sobic010G231300--Sobic007G133000 Sobic003G341300 Sobic003G341300 Sobic010G231300--Sobic003G341300 Sobic001G180200 Sobic001G180200 Sobic010G231300--Sobic001G180200 Sobic002G162400 Sobic002G162400 Sobic010G231300--Sobic002G162400 Sobic008G129900--Sobic010G231300 Sobic008G033000 Sobic008G033000 Sobic008G129900--Sobic008G033000 Sobic001G258200 Sobic001G258200 Sobic008G129900--Sobic001G258200 Sobic008G129900--Sobic001G217900 Sobic008G129900--Sobic006G235400 Sobic003G097600 Sobic003G097600 Sobic008G129900--Sobic003G097600 Sobic008G129900--Sobic001G263100 Sobic002G206300 Sobic002G206300 Sobic008G129900--Sobic002G206300 Sobic008G129900--Sobic003G341300 Sobic006G235400--Sobic010G231300 Sobic001G077300 Sobic001G077300 Sobic006G235400--Sobic001G077300 Sobic004G128900 Sobic004G128900 Sobic006G235400--Sobic004G128900 Sobic006G235400--Sobic003G341300 Sobic003G409700 Sobic003G409700 Sobic006G235400--Sobic003G409700 Sobic006G235400--Sobic008G129900 Sobic006G235400--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic006G235400--Sobic003G380200 Sobic006G235400--Sobic001G180200 Sobic007G058100 Sobic007G058100 Sobic001G217900--Sobic007G058100 Sobic001G217900--Sobic010G231300 Sobic001G217900--Sobic008G129900 Sobic001G378100 Sobic001G378100 Sobic001G217900--Sobic001G378100 Sobic001G217900--Sobic001G258200 Sobic001G217900--Sobic002G206300 Sobic001G217900--Sobic001G263100 Sobic001G217900--Sobic008G033000 Sobic001G540600 Sobic001G540600 Sobic001G217900--Sobic001G540600 Sobic001G263100--Sobic007G058100 Sobic001G263100--Sobic010G231300 Sobic001G263100--Sobic008G129900 Sobic001G263100--Sobic002G162400 Sobic001G263100--Sobic001G180200 Sobic001G263100--Sobic001G217900 Sobic001G263100--Sobic003G341300 Sobic001G263100--Sobic002G206300 Sobic001G263100--Sobic006G235400 Sobic006G161500--Sobic004G128900 Sobic006G161500--Sobic010G231300 Sobic006G161500--Sobic003G409700 Sobic006G161500--Sobic006G235400 Sobic004G322600 Sobic004G322600 Sobic006G161500--Sobic004G322600 Sobic004G035100 Sobic004G035100 Sobic006G161500--Sobic004G035100 Sobic001G073300 Sobic001G073300 Sobic006G161500--Sobic001G073300 Sobic002G119100 Sobic002G119100 Sobic006G161500--Sobic002G119100 Sobic009G194500 Sobic009G194500 Sobic006G161500--Sobic009G194500 Sobic007G133000--Sobic010G231300 Sobic007G133000--Sobic001G217900 Sobic007G133000--Sobic001G263100 Sobic010G125833 Sobic010G125833 Sobic007G133000--Sobic010G125833 Sobic005G068700 Sobic005G068700 Sobic007G133000--Sobic005G068700 Sobic007G133000--Sobic001G540600 Sobic007G133000--Sobic002G206300 Sobic007G133000--Sobic001G180200 Sobic007G133000--Sobic006G235400 Sobic003G341300--Sobic001G180200 Sobic007G157300 Sobic007G157300 Sobic003G341300--Sobic007G157300 Sobic001G283100 Sobic001G283100 Sobic003G341300--Sobic001G283100 Sobic003G341300--Sobic003G409700 Sobic003G341300--Sobic006G235400 Sobic003G341300--Sobic002G162400 Sobic003G341300--Sobic001G077300 Sobic006G090100 Sobic006G090100 Sobic003G341300--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic003G341300--Sobic003G094100 Sobic001G180200--Sobic003G341300 Sobic001G180200--Sobic002G206300 Sobic007G135800 Sobic007G135800 Sobic001G180200--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic001G180200--Sobic009G038701 Sobic009G207900 Sobic009G207900 Sobic001G180200--Sobic009G207900 Sobic001G180200--Sobic003G094100 Sobic001G504400 Sobic001G504400 Sobic001G180200--Sobic001G504400 Sobic001G180200--Sobic001G263100 Sobic001G180200--Sobic002G162400 Sobic002G162400--Sobic003G341300 Sobic002G162400--Sobic001G263100 Sobic002G162400--Sobic001G180200 Sobic002G162400--Sobic002G206300 Sobic002G162400--Sobic010G231300 Sobic002G162400--Sobic006G235400 Sobic002G162400--Sobic001G077300 Sobic002G162400--Sobic001G258200 Sobic002G162400--Sobic008G129900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.